LOC110500132 (LOC106561675)


Basic Information

Item Value
gene id LOC110500132
gene name LOC106561675
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94364015 ~ 94367194 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577316.2
CAGTTTATAAGGTTAACTAAAGGACACTTGGAcagtcctttaaaaaaaatgatggCTGTGATTTGTTTCTCTGAAATATGATACTAGAGAACTGGTCAACACTGCAAGTCCTGAGTTCAGGAAACTTTAAGAAGTGTAATAGGTGTTTACTAGTTGAGTTAGATTTAACAACATGTCACAGTGAGTGAGCAGTGAGTGAGCAGGGGACAGTGCAGCAAGTGTCATCACGTCAGTCAACCTGGGGAGGGCATCTGGTAGTTTAAAATGGTGTGAATATGATCAGCATCAGTGTAGACAGCCAACGGTAGCAAGTAGACTGCCTGGATTACATTTCAGTACCTTCTGCAACTAAAAAAAGTGTATGCATTTAAATGGAGGAAACCATCAAGAAGCAAACTTTTCCTGGGCAGTAAAAAAACTACCGAGAAAGTGATAGTTGGGGCCGTGGAGGTGAGTGAAGCCCTTACCCTTGAGAAGGGTAAAAGATGACTGTTGTGTCCTGTGAGATCCAGGACGAGACTGTGGTAGTTTCTCCCCTCTACCAAGATGATTGCGACGAGGAGCGGGGCGATCAGGAGTGCAGCGAGAGGGTCGTCATCAACATCTCGGGACTGCGCTTCGAAACTCAACTGAGGACCCTCTCGCGCTTTCCCACCACGCTCTTGGGAGACCCACGTAAAAGGATGCGCTTTTTCGATCCGTTGAGAAATGAGTACTTTTTTGACAGGAATAGACCCAGCTTTGATGCCATCCTCTATTATTACCAGTCTGGAGGAAAGCTTAGGAGACCTGTCAACGTTACCATGGACATTTTCATTGAAGAAATGACATTTTATGAAATCGAAGAGGAAGCAATTGATATGTTTAAAGAAGATGAAGGTATGATCATAGAGGTGGAACGTGCGATGCCTGACAACGAGTTTCAGCGCCAGTTGTGGCTGTTGTTTGAGTACCCGGAGAGCTCAGGGCCTGCCCGGATGATCGCTGTCGTATCAGTCAGTGTGATTGTAATATCCATTGTGATCTTCTGTctagagactttaccacagttcAGGGAAGATACCAGCGCAAACCTACCATTAAGTAATCACCATACCACGAATGGGACTACTCTCCATAAAAAACCCAATCTATTCACAGATCCGTTTTTTATGGTGGAGACACTTTGCATCGTGTGGTTTTCCTTTGAGTTTCTCGTGAGGTTTTTATCTTGCCCGAGCAAACCGGCATTTTTCAAAAACGCAATGAACTCCATCGATATCTTAGCGATAGCACCTTATTTCATCACCCTTGGCCTTGAACTAGCAGAGCAACAGGAAGCAGGAAGCGAGCAGGCCATGTCGTTAGCCATACTCAGAGTCATCCGTTTGGTTCGAGTGTTCAGGATTTTTAAACTTTCCAGGCACTCCAAGGGTCTCCAAATCCTGGGTCAGACACTCCACGCCAGCATCAGCGAACTCGGGCTTTTGATATTCTTTCTTCTCATAGGGGTTATTCTGTTCTCCAGCGCAGTTTACTTTGCAGAGGCAGACGACCCTGAATCGGGATTCTCAAGTATCCCCGCCGCGTTCTGGTGGGCGGTGGTGTCCATGACTACGGTTGGATATGGAGACATGTGCCCGGTTACTATTGGTGGCAAAATAGTGGGATCTATGTGTGCCATCGCAGGAGTGTTGACCATAGCCCTACCTGTCCCTGTTATCGTGTCCAATTTTAACTACTTTTATCACAGAGAGCGTAATGACGAGGAAACCGCTGTGTATACCCACGTGACTTGTGGTCAACAGAACGCTTCATTCGGAGAATTCAAATCGACCAGCGACAGCAGACAGTCCCTCACCAAATCAGAGTACACGGAAGAGGATTCTTGCGAGACTATCAGATTAACACACTTCAACCCATTTGAACATTACACTGGCAAGCTGACGGATGTATGAAAAACAAGCATCGGCCTAGTTGAGCAGGGAAAAAACCGTCTCCAGTACAAGATCAAAGACCCTTGCCTTTCTGCTACACTTGAAAGAAAATGCAAACAATTCCATATATATTTGTAACTGGAAAAGTCAAGATAGTGATCAAACGTCACACACTTGTCCCATGAACTACTGGCCAGTAATGTGAGATGACAGGTGCTGCTGCAGGAGAGCCCCTTGAACAAACTACCAATCTGAATGTTCAATGACCCTTTCAATGTACTTTGCAATGTATTCAATGAACTGAAATGACTACTGTGTAGATATCCTGTAATGTATGGTTGTAAATATGCCTTTTTTTTAATGCTATCCTTATGTTCTCAGCTCAGAATCGAAATGTGAACATGCCTTGCTCTGTGTGCCTTTGTGGAAAGTTTTGAAGGAACTACACACGCCTTTATTTTATATAACTATTTATTGTACACAAATTCAAATTTAGCTGTAAATGGTCCTTGGGAAGGAATCACTGGTGTTAAAATAACTTGCCCATAGGAATTAGAATTATGTCTGCATGTAAAGAGAAATCAATAGTTCTCTAAAATGTTAATGAAAGGTCTATTTTCTATTTTTCTAAGATTGCAAAATTGTATGTGAACTTTTGaactatattttttaaataaataaatcctcaTTA

Function

NR:

description
shaker-related potassium channel tsha2

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K10716 kch, trkA, mthK, pch; voltage-gated potassium channel

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577316.2 True 2607 mRNA 0.43 2 94364015 94367194

Neighbor

gene id symbol gene type direction distance location
LOC110500125 LOC106561674 coding downstream 4093 94348518 ~ 94359922 (-)
LOC110500075 LOC106561651 coding downstream 105182 94251418 ~ 94258833 (-)
LOC110500060 tnni3 coding downstream 120449 94232734 ~ 94243566 (-)
LOC110500065 LOC106561650 coding downstream 134470 94222366 ~ 94229545 (-)
LOC110500043 LOC106561646 coding downstream 142869 94184199 ~ 94221146 (-)
LOC110500153 LOC106561673 coding upstream 45050 94412244 ~ 94417008 (-)
LOC110500221 LOC106561669 coding upstream 159354 94526548 ~ 94529608 (-)
asb13b LOC106561665 coding upstream 236850 94604044 ~ 94611792 (-)
LOC110500283 gdi2 coding upstream 298734 94665928 ~ 94686821 (-)
LOC110500320 LOC106604557 coding upstream 410364 94777558 ~ 94781368 (-)
G206761 NA non-coding downstream 1256 94362510 ~ 94362759 (-)
G206756 NA non-coding downstream 25749 94338030 ~ 94338266 (-)
G206751 NA non-coding downstream 34664 94329101 ~ 94329351 (-)
G206748 NA non-coding downstream 41723 94321722 ~ 94322292 (-)
G206773 NA non-coding upstream 17924 94385118 ~ 94385353 (-)
G206827 NA non-coding upstream 115200 94482394 ~ 94482692 (-)
G206830 NA non-coding upstream 119331 94486525 ~ 94486803 (-)
G206834 NA non-coding upstream 123214 94490408 ~ 94490696 (-)
G206839 lap2b non-coding upstream 131793 94498987 ~ 94499815 (-)
G206750 NA other downstream 35832 94327910 ~ 94328183 (-)
G206744 LOC106561643 other downstream 50097 94313390 ~ 94313918 (-)
G206742 LOC106561643 other downstream 51241 94312424 ~ 94312774 (-)
G205192 NA other downstream 1401081 92962044 ~ 92962934 (-)
LOC110499897 LOC106573100 other downstream 1924414 92398054 ~ 92443838 (-)
G207244 LOC100194703 other upstream 249721 94616915 ~ 94617232 (-)
G207249 NA other upstream 262243 94629437 ~ 94629739 (-)
G207340 LOC105021815 other upstream 395468 94762662 ~ 94776356 (-)
G207858 LOC106561692 other upstream 1010529 95377723 ~ 95408714 (-)
G207959 NA other upstream 1156774 95523968 ~ 95524227 (-)

Expression


Co-expression Network