LOC110500221 (LOC106561669)


Basic Information

Item Value
gene id LOC110500221
gene name LOC106561669
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94526548 ~ 94529608 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577457.2
GAACGTATCATTTGAGCGTACATGCGTCGATCCAGAAGACGTGGCTCCAGCTTTTCTCCTCTGCTGTCAACAAGCTTCACACAACAGAGACTGCTAGAAGCTATCTAACGATTATTGAATGAGCAGTAGTTATTGGCCAATTGCTACACTGCAGCCAAAATGATCTCTCTAACGGATTCACAAAAGATCGGGATGGGGTTGACAGGCTTCGGCGTGTTCTTCCTCTTCTTCGGTATGGTCCTGTTTTTTGACAAAGCTCTTCTTGCCATTGGAAATatatTGTTTGTAGCAGGCCTAGCCTTTGTCATCGGCTTGGAGCGTACCTTCAAATTCTTCTTCCAGAGACACAAATTTAAAGCCACCAGTTTCTTCCTGGGGGGCGTGGTCGTGGTTCTGATTGGCTGGCCCATCATTGGAGTGGTGCTGGAGATCTATGGATTTTTCCTCTTATTCAGGGGCTTTTTCCCAGTGGCAGTAGGCTTCATCAGGAGGGTGCCTGTCCTCGGGTCCATACTCAACCTCCCAGGGATTAGTGGATTGGTGGACAAAGTCAGCGACAGCAACAATATGGTATAACAGTGACAACCTTTGGATTGGAGGGTATTACATCGCTTAACTCTATTTGTAATGGGGACTTTGTTCCCTATTGGTCAACTACTATTGGTCAACTACAATTGGTCAACTACTATTGGTCAACACAAGTTAAAGGTCAAAGCTGTGAATCAAAAACCTCTTTCCGTTCAAAGAAATATAATCTTATTTTGGGCAGGTGTATGAATACGACTGGCTTCGTAAAGTTTATTTTGACGATAAGGAAATGGCTTCGTAACCTGGTTGCCATTGATGGACATTGTTACTAAAGGACTACTTTATTTCGAAGCCCAATGGGTGAATTGGGCCCTTTTTGTGTTACTGTCCGTTCCTGATcgactgatgatgatgattgacACGTGACTGGACCAATCACTGGACTGGACATCTCTTTGGAGGAGTCTGGAATCTGTTACAGATGCCTTTCTTCTACATGGATAGATATGTTCTAGATTGGAATGTTGATGTGCACAATGGGTTATAATGAT
>XM_021577466.2
GCGAACGTATCATTTGAGCGTACATGCGTCGATCCAGAAGACGTGGCTCCAGCTTTTCTCCTCTGCTGTCAACAAGCTTCACACAACAGAGACTGCTAGAAGCTATCTAACGATTATTGAATGAGCAGTAGTTATTGGCCAATTGCTACACTGCAGCCAAAATGATCTCTCTAACGGATTCACAAAAGATCGGGATGGGGTTGACAGGCTTCGGCGTGTTCTTCCTCTTCTTCGGTATGGTCCTGTTTTTTGACAAAGCTCTTCTTGCCATTGGAAATatatTGTTTGTAGCAGGCCTAGCCTTTGTCATCGGCTTGGAGCGTACCTTCAAATTCTTCTTCCAGAGACACAAATTTAAAGCCACCAGTTTCTTCCTGGGGGGCGTGGTCGTGGTTCTGATTGGCTGGCCCATCATTGGAGTGGTGCTGGAGATCTATGGATTTTTCCTCTTATTCAGGGGCTTTTTCCCAGTGGCAGTAGGCTTCATCAGGAGGGTGCCTGTCCTCGGGTCCATACTCAACCTCCCAGGGATTAGTGGATTGGTGGACAAAGTCAGCGACAGCAACAATATGGTATAACAGTGACAACCTTTGGATTGGAGGGTGTATGAATACGACTGGCTTCGTAAAGTTTATTTTGACGATAAGGAAATGGCTTCGTAACCTGGTTGCCATTGATGGACATTGTTACTAAAGGACTACTTTATTTCGAAGCCCAATGGGTGAATTGGGCCCTTTTTGTGTTACTGTCCGTTCCTGATcgactgatgatgatgattgacACGTGACTGGACCAATCACTGGACTGGACATCTCTTTGGAGGAGTCTGGAATCTGTTACAGATGCCTTTCTTCTACATGGATAGATATGTTCTAGATTGGAATGTTGATGTGCACAATGGGTTATAATGAT

Function

NR:

description
vesicle transport protein GOT1B-like

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577457.2 False 1079 mRNA 0.44 5 94526548 94529606
XM_021577466.2 True 912 mRNA 0.46 6 94526548 94529608

Neighbor

gene id symbol gene type direction distance location
LOC110500153 LOC106561673 coding downstream 109540 94412244 ~ 94417008 (-)
LOC110500132 LOC106561675 coding downstream 159354 94364015 ~ 94367194 (-)
LOC110500125 LOC106561674 coding downstream 166626 94348518 ~ 94359922 (-)
LOC110500075 LOC106561651 coding downstream 267715 94251418 ~ 94258833 (-)
LOC110500060 tnni3 coding downstream 282982 94232734 ~ 94243566 (-)
asb13b LOC106561665 coding upstream 74436 94604044 ~ 94611792 (-)
LOC110500283 gdi2 coding upstream 136320 94665928 ~ 94686821 (-)
LOC110500320 LOC106604557 coding upstream 247950 94777558 ~ 94781368 (-)
LOC110500345 LOC106561680 coding upstream 430310 94959918 ~ 94974913 (-)
trnay-gua NA coding upstream 479994 95009602 ~ 95009691 (-)
G207194 NA non-coding downstream 3581 94522087 ~ 94522967 (-)
G207192 LOC106561670 non-coding downstream 8317 94517576 ~ 94518231 (-)
G206843 lap2b non-coding downstream 22392 94501893 ~ 94504156 (-)
G206839 lap2b non-coding downstream 26733 94498987 ~ 94499815 (-)
G206834 NA non-coding downstream 35852 94490408 ~ 94490696 (-)
G207205 NA non-coding upstream 25916 94555524 ~ 94555822 (-)
G207225 NA non-coding upstream 51590 94581198 ~ 94581807 (-)
G207226 NA non-coding upstream 52316 94581924 ~ 94582416 (-)
G207227 NA non-coding upstream 52823 94582431 ~ 94582734 (-)
G207251 NA non-coding upstream 103339 94632947 ~ 94633168 (-)
G206750 NA other downstream 198365 94327910 ~ 94328183 (-)
G206744 LOC106561643 other downstream 212630 94313390 ~ 94313918 (-)
G206742 LOC106561643 other downstream 213774 94312424 ~ 94312774 (-)
G205192 NA other downstream 1563614 92962044 ~ 92962934 (-)
LOC110499897 LOC106573100 other downstream 2086947 92398054 ~ 92443838 (-)
G207244 LOC100194703 other upstream 87307 94616915 ~ 94617232 (-)
G207249 NA other upstream 99829 94629437 ~ 94629739 (-)
G207340 LOC105021815 other upstream 233054 94762662 ~ 94776356 (-)
G207858 LOC106561692 other upstream 848115 95377723 ~ 95408714 (-)
G207959 NA other upstream 994360 95523968 ~ 95524227 (-)

Expression


Co-expression Network