LOC110500283 (gdi2)


Basic Information

Item Value
gene id LOC110500283
gene name gdi2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94665928 ~ 94686821 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577587.2
ACCTACGCTGCGCAGCCGGAAAACTTTTCAACTACCAAACAGCCATTCCATTTTCCCTGACATAAATAACCGTAGGAATAAAGTAAAGAAGGACACTCAGCTATGGATGAAGAATATGATGTTATCGTTCTCGGTACCGGGTTAACGGTGAGAAAATGGACAAAGCAATAGAATGCATTCTGTCTGGCATTATGTCAGTAAAGGGGAAGAAGGTGCTTCATATGGACAGGAACTCGTACTATGGAGCAGAGAGCGCTTCCATCACACCACTGGAAGACTTGTACAAGCGCTTCAGCCTTCCAGGTAAACCTCCGGAGTCCATGGGGAGAGGTCGGGACTGGAGCGTGGACCTCATCCCAAAGTTCCTGATGGCCAATGGTCAGCTGGTGAGGATGTTGCTGATCACTCAGGTGACCCGTTACCTGGACTTCAAGGTGATCGAGGGCAGCTTTGTCTACAAGAAGGGAGCCATCTACAAAGTGCCTGTCACTGAGACAGAGGCACTGGCCTCCAgtttgatggggatttttgagAAGAGGCGGTTTAGGAACTTCTTGATCTTCGTTGCCAACTACGACTTGAACGATCCCAAAACCATGGAGGGTGTCGACCCCAACAAGTCGTCGATGCGTGCCCTGTACAAGAAGTTCAGCCTGGGCCAGGATGTGATGGACTTCACTGGTCACGCCCTCGCTCTCTACAGGACAGACGACTACCTGGATCAGCCCTGCATCAACACTATCAATAGGATCAAATTGTACAGTGAGTCTCTGGCCAGATATGGCAAGAGTCCttacctctaccctctctacgGCCTGGGGGAGCTGCCACAAGGCTTTGCCAGGTTGAGCGCTATCTATGGTGGCACCTACATGCTGAACAAGCCCATAGAGGAGATTGTTATGGAGAATGGAAAGGTGGTGGGGGTAAAGTCAGAGGGAGAGATAGCCCGCTGTAAGCAGCTGATCTGTGACCCCAGTTACATCATGGACAGAGTCAGCAAAGTCGGCCAAGTGGTCCGTATCATCTGTGTCATGAGCCACCCCATCAAGAACACCGGCGACGTCAACTCCTGCCAGATCATCATTCCTCAGATCCAGGTCAACAGGAAACATGACATCTACGTGTGTATGATCTCCTCGGCCCACAACGTGGCAGCGCAGGGCAAGTACGTTGCCATCGCCAGCAGCGTAGTGGAGACTAACGACCCAGAGAAGGAACTCAAGCCAGCCCTGGATCTCCTGGAGCCCATTGAACAGAAGTTTGTGAGCGTCAGTGATCAATATGCACCAACTGACATGGGAAAAGACAGCCAGATATTTATTTCACGCACGTATGACGCAACGACCCACTTTGAGACCACCTGTGACGACATCAAGGACATCTACGAGCGCGCGATGGGCACGGAGTTTGACTTTGCAGAGATGGAGCGCACGAAGAACGACATCTTTGGAGACGCTGGTGATCAGTGATAGTATAACCAACACGTCCAGACGACTCCCAAATCTTAACCAACTGGTTTATAATCCAAATGTATTGTTGGAATCTGTATCTATGACCCTTtaaaacaatggaaatacattttgtaGAAAAAAGAAGAATGAAATATGTTTTACTAATTTGTGATGGCTGCGTTTTGTAGGCTAATTTGCTTGACAGTTAGTTAAAAAACATGCAATTATCACATCGCGTGACATCATGAAGGTTTCTTCACTTTCTGACAAATGTGAATGTCGCCAAATAATTGGTTTTATTCGGGTTTATACATAGACAATATAAATGTgatataaattgtattttttacataATATTCTGTTGTTTAAAGTGAAATAAAGATGTATTTTACCTGGGATAGAGAGAAGA
>XM_021577580.2
CAGAAGAAAGGTACGTTCGCAGGGATCATTACCTACGCTGCGCAGCCGGAAAACTTTTCAACTACCAAACAGCCATTCCATTTTCCCTGACATAAATAACCGTAGGAATAAAGTAAAGAAGGACACTCAGCTATGGATGAAGAATATGATGTTATCGTTCTCGGTACCGGGTTAACGGAATGCATTCTGTCTGGCATTATGTCAGTAAAGGGGAAGAAGGTGCTTCATATGGACAGGAACTCGTACTATGGAGCAGAGAGCGCTTCCATCACACCACTGGAAGACTTGTACAAGCGCTTCAGCCTTCCAGGTAAACCTCCGGAGTCCATGGGGAGAGGTCGGGACTGGAGCGTGGACCTCATCCCAAAGTTCCTGATGGCCAATGGTCAGCTGGTGAGGATGTTGCTGATCACTCAGGTGACCCGTTACCTGGACTTCAAGGTGATCGAGGGCAGCTTTGTCTACAAGAAGGGAGCCATCTACAAAGTGCCTGTCACTGAGACAGAGGCACTGGCCTCCAgtttgatggggatttttgagAAGAGGCGGTTTAGGAACTTCTTGATCTTCGTTGCCAACTACGACTTGAACGATCCCAAAACCATGGAGGGTGTCGACCCCAACAAGTCGTCGATGCGTGCCCTGTACAAGAAGTTCAGCCTGGGCCAGGATGTGATGGACTTCACTGGTCACGCCCTCGCTCTCTACAGGACAGACGACTACCTGGATCAGCCCTGCATCAACACTATCAATAGGATCAAATTGTACAGTGAGTCTCTGGCCAGATATGGCAAGAGTCCttacctctaccctctctacgGCCTGGGGGAGCTGCCACAAGGCTTTGCCAGGTTGAGCGCTATCTATGGTGGCACCTACATGCTGAACAAGCCCATAGAGGAGATTGTTATGGAGAATGGAAAGGTGGTGGGGGTAAAGTCAGAGGGAGAGATAGCCCGCTGTAAGCAGCTGATCTGTGACCCCAGTTACATCATGGACAGAGTCAGCAAAGTCGGCCAAGTGGTCCGTATCATCTGTGTCATGAGCCACCCCATCAAGAACACCGGCGACGTCAACTCCTGCCAGATCATCATTCCTCAGATCCAGGTCAACAGGAAACATGACATCTACGTGTGTATGATCTCCTCGGCCCACAACGTGGCAGCGCAGGGCAAGTACGTTGCCATCGCCAGCAGCGTAGTGGAGACTAACGACCCAGAGAAGGAACTCAAGCCAGCCCTGGATCTCCTGGAGCCCATTGAACAGAAGTTTGTGAGCGTCAGTGATCAATATGCACCAACTGACATGGGAAAAGACAGCCAGATATTTATTTCACGCACGTATGACGCAACGACCCACTTTGAGACCACCTGTGACGACATCAAGGACATCTACGAGCGCGCGATGGGCACGGAGTTTGACTTTGCAGAGATGGAGCGCACGAAGAACGACATCTTTGGAGACGCTGGTGATCAGTGATAGTATAACCAACACGTCCAGACGACTCCCAAATCTTAACCAACTGGTTTATAATCCAAATGTATTGTTGGAATCTGTATCTATGACCCTTtaaaacaatggaaatacattttgtaGAAAAAAGAAGAATGAAATATGTTTTACTAATTTGTGATGGCTGCGTTTTGTAGGCTAATTTGCTTGACAGTTAGTTAAAAAACATGCAATTATCACATCGCGTGACATCATGAAGGTTTCTTCACTTTCTGACAAATGTGAATGTCGCCAAATAATTGGTTTTATTCGGGTTTATACATAGACAATATAAATGTgatataaattgtattttttacataATATTCTGTTGTTTAAAGTGAAATAAAGATGTATTTTACCTGGGATAGAGAGAAGA

Function

symbol description
gdi2 Predicted to enable Rab GDP-dissociation inhibitor activity. Predicted to be involved in vesicle-mediated transport. Predicted to act upstream of or within protein transport and small GTPase mediated signal transduction. Predicted to be active in cytoplasm. Orthologous to human GDI2 (GDP dissociation inhibitor 2).

NR:

description
rab GDP dissociation inhibitor beta-like isoform X1

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0005093 Rab GDP-dissociation inhibitor activity molecular_function

KEGG:

id description
K17255 GDI1_2; Rab GDP dissociation inhibitor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577587.2 False 1863 mRNA 0.47 11 94665928 94686791
XM_021577580.2 True 1870 mRNA 0.47 11 94665928 94686821

Neighbor

gene id symbol gene type direction distance location
asb13b LOC106561665 coding downstream 54136 94604044 ~ 94611792 (-)
LOC110500221 LOC106561669 coding downstream 136320 94526548 ~ 94529608 (-)
LOC110500153 LOC106561673 coding downstream 248920 94412244 ~ 94417008 (-)
LOC110500132 LOC106561675 coding downstream 298734 94364015 ~ 94367194 (-)
LOC110500125 LOC106561674 coding downstream 306006 94348518 ~ 94359922 (-)
LOC110500320 LOC106604557 coding upstream 90737 94777558 ~ 94781368 (-)
LOC110500345 LOC106561680 coding upstream 273097 94959918 ~ 94974913 (-)
trnay-gua NA coding upstream 322781 95009602 ~ 95009691 (-)
LOC110500368 LOC105021811 coding upstream 328854 95015675 ~ 95020429 (-)
LOC110502417 LOC106561684 coding upstream 410558 95097379 ~ 95124547 (-)
G207269 LOC106561663 non-coding downstream 13031 94652121 ~ 94652897 (-)
G207266 NA non-coding downstream 14546 94648358 ~ 94651382 (-)
G207262 NA non-coding downstream 20110 94645354 ~ 94645818 (-)
G207261 NA non-coding downstream 20848 94644769 ~ 94645080 (-)
G207258 NA non-coding downstream 26388 94637144 ~ 94639540 (-)
G207305 NA non-coding upstream 19010 94705831 ~ 94706046 (-)
G207308 NA non-coding upstream 24193 94711014 ~ 94711213 (-)
G207309 NA non-coding upstream 24447 94711268 ~ 94711523 (-)
G207311 NA non-coding upstream 25787 94712608 ~ 94712890 (-)
G207313 NA non-coding upstream 28238 94715059 ~ 94715426 (-)
G207249 NA other downstream 36189 94629437 ~ 94629739 (-)
G207244 LOC100194703 other downstream 48696 94616915 ~ 94617232 (-)
G206750 NA other downstream 337745 94327910 ~ 94328183 (-)
G206744 LOC106561643 other downstream 352010 94313390 ~ 94313918 (-)
G206742 LOC106561643 other downstream 353154 94312424 ~ 94312774 (-)
G207340 LOC105021815 other upstream 75841 94762662 ~ 94776356 (-)
G207858 LOC106561692 other upstream 690902 95377723 ~ 95408714 (-)
G207959 NA other upstream 837147 95523968 ~ 95524227 (-)
G207884 NA other upstream 917407 95604228 ~ 95609786 (-)
G207876 LOC106561706 other upstream 995216 95680851 ~ 95686864 (-)

Expression


Co-expression Network