parietopsin (LOC106561711)


Basic Information

Item Value
gene id parietopsin
gene name LOC106561711
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 95628449 ~ 95632062 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580524.2
TCTATTCTATTATCTGTATATTCTAAATCTATTCTATTATCTGTATATTCTAAATCTATTCTATTATCTGTATATTCTAAATCTATTCTATTATCTGTATATTCTAAATCTATTATCTCTTCTTTGAGAGAGATTGTTCATGGTTGAAaaagtgaagaaaaaaaagtgGTCTTGTTGGAAAAACTCAcattgagagaatgagagaatttTATCCAAAGCCTGTATAGTTTACATAAATGTCCATCttgtaatttgtattttttttctttggGAGTGTGTTTTTGATTTGATTATGAATTAAAGATGGCAACAACCTAATCTTGTTCCTGTTTTAGGCCTACTTTTGTGTATGCCATATAGGGCTAGATTTCAGTTATCCACCCTTTCCTTGCCTCAGAGAAAAGTCAGGAAAGCAACTATAATTTATCTAACCTCTTGTCTCTCAATGTAAATGTATATTGAATTGACCCAGTTGGCTAAAAATAATTTAGAAAATGCACTTTTGACACAGACAGGGTATATCCTAGGCCCAGGGCTGTCTCTGGGCCTACACTTTGCACCTTTTTCAATACGGAACTCTCAATAAATCCTGATCAGATCAATCAATATAATCGTACAAATCATGTTAGGGAGCAATTTCCCAAATGGGTTTTTAAGTTGGTGTTGAGCAGCATGTTCTCAATGACAGATAATCCAAAATGTAATAAGACATCCTGAATACAGAAGCTATTTAACTAGGATCAGACATAATAAGATCAAGCTATGACGTTTGGGCTTTGATTGAGATGGGATACagacagcaaaggacctttttTCTGTAGTTTCTTGGTCATATGGTGGAGAGCGTGCGTTTTAAATtaagcaccatggacagcaccaCTGCCGTCGGCACACCTTGGCGCTTCGGCCCGACTTTGAACTCTACTTCTCCGGGCTTCAAATCTAGTACTGTGGCGCCCACGATTTTTCCACGGGCAGGCTACAGCATCCTCTCCTATCTTATGTTCATCAATGCCATTTTCTCTGTTTTTAACAATACTCTGGTGATAACGGTGTTGGTGAAGAATCGTACTCTCCTCAATCCAATGAATGTGATCATCCTCAGTTTAGCCGTGTCCGATTTGATGATAGCCTTGTGCGGTTCGTCGATAGTCACCATTACCAACTATCATGGTTCATTCTTTCTTGGCGACGAGTTCTGCATCTTTCAAGGATTTGCTGTGAACTATTTCGgtCTGGTGTCTATGTGCACGTTAACACTGCTGGCGTACGAGCGCTACATCGTGGTGTGTAAGCCCATGGCAGGCTTCAAGATGAACGTACGTCGGAGCTTTCAGGGGCTCCTGGGGGTCTGGCTGTTCTGTTTGTTCTGGGCCGTGCCCCCACTGCTGGGTTGGAGCTCCTATGGACCCGAGGGCGTCCAGACCTCCTGCTCTCTGGGCTGGGAGGAGAGGTCCTGGAGTAACTATAGTTACCTGATCCTGTACACGCTGTTCTGTTTCCTCCTGCCTGTCGCAATCATCATCTACTGTTACGCCAATGTCCTCACCTCCATGAGACGGcttAACCGTAGTACGGAGTTGCAGGGCGGTCGTCCCTGTCTGCAGGACAACGAGCGGGCGGTAAGGATAGTGCTGGCCATGATCGGGGCCTTCTTTGTCTGCTGGCTGCCTTACACAGCCCTGTCCGTGGTGGTTGTGGTGGACCCAGAGCTCCACATCCCTCCGCTAGTGGCTACCATGCCTATGTACTTCGCCAAGACCAGTCCCGTCTACAACCCCATCATCTACTTCCTAAGCAACAAGCAGTTCCGTGATGCTACTCTGGAAGTCCTCTCCTGTGGGCGCTTCATTTCCCACGACCCGGCCACCGACACCATCCCCATGCACTCCATGACCCTGAGGACCACGGTGGGCAGAAGGGTGGGCAGAAAAAAACAAGGGATCAGTGCACACAGCAGGGTGCTTCCTCTgtgactcctctctcctccatctcctaaatctccatctcctccatctcctaaatctccatctcct
>TU235355
TATTCTAAATCTATTCTATTATCTGTATATTCTAAATCTATTCTATTATCTGTATATTCTAAATCTATTCTATTATCTGTATATTCTAAATCTATTCTATTATCTGTATATTCTAAATCTATTCTATTATCTGTATATTCTAAATCTATTCTATTATCTGTATATTCTAAATCTATTCTATTATCTGTATATTCTAAATCTATTATCTCTTCTTTGAGAGAGATTGTTCATGGTTGAAaaagtgaagaaaaaaaagtgGTCTTGTTGGAAAAACTCAcattgagagaatgagagaatttTATCCAAAGCCTGTATAGTTTACATAAATGTCCATCttgtaatttgtattttttttctttggGAGTGTGTTTTTGATTTGATTATGAATTAAAGATGGCAACAACCTA

Function

NR:

description
PREDICTED: vertebrate ancient opsin-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580524.2 False 2036 mRNA 0.45 5 95628449 95631972
TU235355 True 407 lncRNA 0.24 1 95631656 95632062

Neighbor

gene id symbol gene type direction distance location
LOC118944198 NA coding downstream 357177 95271093 ~ 95271272 (-)
LOC110502417 LOC106561684 coding downstream 503902 95097379 ~ 95124547 (-)
LOC110500368 LOC105021811 coding downstream 608020 95015675 ~ 95020429 (-)
trnay-gua NA coding downstream 618758 95009602 ~ 95009691 (-)
LOC110500345 LOC106561680 coding downstream 653536 94959918 ~ 94974913 (-)
LOC110502485 LOC106561707 coding upstream 3924 95635896 ~ 95664503 (-)
LOC110500466 nampt coding upstream 71387 95703359 ~ 95721115 (-)
LOC110533932 NA coding upstream 250159 95882131 ~ 95883679 (-)
LOC110502500 LOC106561698 coding upstream 419330 96051302 ~ 96092405 (-)
LOC110502509 LOC106561697 coding upstream 498339 96129727 ~ 96370206 (-)
G208010 NA non-coding downstream 3443 95624090 ~ 95625006 (-)
G208007 NA non-coding downstream 7546 95620681 ~ 95620903 (-)
G208003 NA non-coding downstream 12044 95616090 ~ 95616405 (-)
G208000 LOC106561712 non-coding downstream 24550 95603454 ~ 95603899 (-)
G207997 NA non-coding downstream 26577 95601605 ~ 95601872 (-)
G207878 NA non-coding upstream 325 95632297 ~ 95633415 (-)
G207885 NA non-coding upstream 2105 95634077 ~ 95634352 (-)
G207880 NA non-coding upstream 2549 95634521 ~ 95635415 (-)
G208014 NA non-coding upstream 21286 95653258 ~ 95695097 (-)
G207876 LOC106561706 non-coding upstream 48879 95680851 ~ 95686864 (-)
G207884 NA other downstream 18663 95604228 ~ 95609786 (-)
G207959 NA other downstream 104222 95523968 ~ 95524227 (-)
G207858 LOC106561692 other downstream 219735 95377723 ~ 95408714 (-)
G207340 LOC105021815 other downstream 852093 94762662 ~ 94776356 (-)
G207249 NA other downstream 998710 94629437 ~ 94629739 (-)
G208077 NA other upstream 197402 95829374 ~ 95832362 (-)
G208472 NA other upstream 502105 96134077 ~ 96134472 (-)
G208658 NA other upstream 789894 96421866 ~ 96422224 (-)
G209560 NA other upstream 1784849 97416821 ~ 97417188 (-)

Expression


Co-expression Network