LOC110502500 (LOC106561698)


Basic Information

Item Value
gene id LOC110502500
gene name LOC106561698
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 96051302 ~ 96092405 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960073.1
TAGCCTAGATTTAATGAACGGCTAAAATAATGGCATGAATTAAGTGTGCTTTTCTATAGTTCTACTCAGACGCGCATCACGTGTTTCGGTTCAATTCTCAGCGGTTTCCATGAACTGAACTATAGGCTCCAAGTGCTCAGATTGCTCCAATTCTCCGGGTATGTTGGTCGCTTGTCAAAGCCGGACTGAAATCCACAACCAAAAAAATGAACATTCTGAGAAATTGATTGAGTTGATTATTGAAGAAAGCGATATTGCTATTGGACAATAAAGAATATGGAAAACTGAAAACTGGAAGCGGGGGTTCGTTCGGGCAAGGGTTCTGCTACGAAGAAGTTTCAGAGCGGATATAACGTCGACACGTCGAAGCTCTGCAGCCTCTGAGCTCCTTCAGTTCAGAAAAAAATACTTGGGTGTGAGTTGAACCAATGACGAAAGATTACAACAGAGAAATTCCTTCACCTGAAGAAACCATTATCTTCCTTAGAAAGATGGAGGTTCCATCTAAGGCGAGGTGGACCCCAGACGACGTCTCCTCTACCCCATCATCTTCAGGGATGCAGAGGTCCAGTTGCTCCAGTCTGAAGatGTTCCTGGCTGCCCTGTCCTTTGCCTACTTCTCTAAGGCCTTGTCTGGGAGTTACATGAAAAGTACGATAACCCAGCTGGAGAGGAGATTTGATATCCCAAGTTATTTGATAGGTGTTATCGACGGGAGCTTTGAAATAGGTAACCTATTGGTGATCGCCTTTGTGAGTTATTTTGGTGCCAAGCTTCACCGACCTAAGATCATAGCGATCGGATGTGTCCTGATGTCGTTTGGGACGTTCCTCATCGCCATGCCTCATTTTATTTTAGGACGCTATAAGTTCCAATCGTCAGTTAGAGGGTCCATGAATTCAACCACTACCTTCGGTCCATGTCCAGCAAGCTCAGCTGAGTCCACACAGGCAGGTGACAAGGCCTCTATACTGCCGTCTGTAGGCTGTGAGCAAGAGTCCAGTGTGTCTATGTGGATCTATGTGTTCCTGGGTAATGTGTTAAGAGGGATAGGAGAGACTCCTGTACATCCGCTGGGAATCTCCTATATAGACGACTACGCCAGGTCTGAGAATGCAGCCCTTTACATTAGCTGTGTCCAGACCATATCAATCATAGGTCCCGTCTTTGGCTACTTACTAGGATCCTTGTGTGCCAAGATATACGTTGACATAGGATACGTGAACATGGAGACTATCACCATCACCCCAGGCGATGCCCGCTGGGTGGGGGCGTGGTGGCTGGGGTACCTCATAGCCGGGGCTATCACCCTCATGTCTGCTGTACCCTTCTGGTTCCTGCCCAAGTCGTTGCCTATTCCCGTGGATAAGCAACTTAATGCCAACTTCACCCCAGAACAGACCCGGTTCATCAAGGACTCTCCCTCAGCCATGGAACATAagtttagaccagaggaaccagccAACTTCCATCAAATGGCTAAAGAATTTGTTCCAACATTGAAGAGCCTACTGGGAAGTCCAGTCTATATAACCTACCTCTGCGTGACTATTATTCAATTCAACTCTCTCATCGGCATGGTAACCTACAAGCCCAAATACATTGAGCAACATTACGGAAAGTCAGCATCAAAAGCCAACTTCCTAATGGGCATGGTCAACATCCCTGCAGTGGCTCTGGGGATGTTCTCAGGTGGTGTGCTCATGAAGAAGTTCAAGCTGGGCGTCATGGGAGCTGCTAAGTTCGCCTTCGGGACCTCCCTGCTGGGGTACTTCCTGTCCCTCTTCTTCTTCGCCATGGGCTGTGACAACGCCAAGGTGGCTGGGATAACCATGTCATACACAGGGGTGGAGGGTTTGTCGTACCAGCAGCCATCTCTGTTCTCTGAGTGTAACTCCGGTTGCCTGTGCTCCGGGAGTGACTGGGACCCTGTCTGTGGAGAGAACGGGATCACTTACGTGTCCCCCTGTTTGGCTGGCTGTACATCCTCTACCGGAGCAGGCAAAAACACGgtGTTTCACCAGTGCAGGTGTGTGGCGGTGACAGGGGCAGGTTCTCAGCCCAGTAACCTGACTGCCTCCCTGGGTCACtgtccaatcagagacagctgtgaCACAATGTTCCCCTACTTCCTCTTCTTGTCTGTCATCACTTCCTTCATCATCTCTCTGGGGGGAACGCCAGGCTTCATGCTTCTCATCAGGTGCATTAAGCCTGAGTTTAAATCCCTTGCTCTTGGAGTCCACACGTTGGCCACCCGGACCCTGGcTGGCATCCCTGCACCTATCTACTTCGGAGCCGTCATAGACACTACCTGTTTAAAGTGGGGAAACACAAAATGCGGAAGAAGAGGAGCGTGTAGAATCTACAACACAACAGCCTACAGggTAGTATACCTAGGTCTGACTATGGGCCTAAGGACTGTCTCTTTCTTCCTGTGTATACTGGGCTTCGCTCTACTCAGGAGGCACGTCAAGCAGGAAGAGAAAATAGCATTGACCAATGGGAATGTAGAGATGGAGTTCGAGTCTCTCAGGAAAGAGGAAAGCAACAACTCTATCCACTCTGACCAGTTTGTAAGAGCGCTGGACTGTAACCCTGACAGGGAGACACGGCTTTGATGGTCCTCAATATCTCAACATAGCTCGACTCCAAGACAGAATGAAACAGGTGTCGGGGGGAGCAACTTTTGCCCTCATAAAGCTAGTTGTGATCTCCCCCAAGTGGGTTAACCCTGTCGGAGTAGACTGTGTTTAGCAAGTTAGCCAACAGTCTAAGAAGCCCATGTTTTCCTTGTCACCGTTCACTACAACGCTAATCATTTTCGACAGTACCAGTGTTAATTATTTTTGGGGTGAATATTCAACAAATATTTTTTGTGAAAGGTGTCAGTACCCTGCGCTGGTACTCCATACCATTGTGTACCTGCTCCACTGACCCAATACATGCCCTGACATCTCCTTTTACGGTATTTTTCCACCCTGAATACAAGTGATTTAGCGAGGAGAGAAGAGCATAAAGTATATTTGTACTGTACTCCTGTAGATGATGTGAAAATaaattgatgtttttttgtttatacaGTACCTAGTGAAAGTATACACACCCCTTGCAGAGTattcacattttgctacattacaCTTTTTATCTAAAAAGGGATTACATTAGATATTTTTCCTCCAGATCTATACAACTCCATATTTCCAAAAAAGTGAACAAAAgttatttcaaagattttactgagttaaagttcatatgaggaaattgTAAtgaattagaccctaatctatggatttcacatgactgggaatacagaactgaatctgttgatcacaga

Function

NR:

description
PREDICTED: solute carrier organic anion transporter family member 1C1-like isoform X1

GO: NA

KEGG:

id description
K08747 SLCO1C; solute carrier organic anion transporter family, member 1C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960073.1 True 3337 mRNA 0.47 15 96051302 96092405

Neighbor

gene id symbol gene type direction distance location
LOC110533932 NA coding downstream 167623 95882131 ~ 95883679 (-)
LOC110500466 nampt coding downstream 330187 95703359 ~ 95721115 (-)
LOC110502485 LOC106561707 coding downstream 386799 95635896 ~ 95664503 (-)
parietopsin LOC106561711 coding downstream 419330 95628449 ~ 95632062 (-)
LOC118944198 NA coding downstream 780030 95271093 ~ 95271272 (-)
LOC110502509 LOC106561697 coding upstream 37906 96129727 ~ 96370206 (-)
LOC110500576 NA coding upstream 541436 96633841 ~ 96640404 (-)
LOC110500541 LOC106561741 coding upstream 554725 96647130 ~ 96897073 (-)
pik3c2g LOC106561742 coding upstream 927186 97019591 ~ 97077900 (-)
LOC110502515 reln coding upstream 996802 97089207 ~ 97387953 (-)
G208308 NA non-coding downstream 1463 96049416 ~ 96049839 (-)
G208320 NA non-coding downstream 23962 96027046 ~ 96027340 (-)
G208319 NA non-coding downstream 25282 96024926 ~ 96026020 (-)
G208316 NA non-coding downstream 37843 96011026 ~ 96013459 (-)
G208306 NA non-coding downstream 48474 96000916 ~ 96002828 (-)
G208361 NA non-coding upstream 17591 96109996 ~ 96117440 (-)
G208368 NA non-coding upstream 30637 96123042 ~ 96124588 (-)
G208469 NA non-coding upstream 33547 96125952 ~ 96126837 (-)
G208468 NA non-coding upstream 34764 96127169 ~ 96129234 (-)
G208077 NA other downstream 218940 95829374 ~ 95832362 (-)
G207876 LOC106561706 other downstream 364438 95680851 ~ 95686864 (-)
G207884 NA other downstream 441516 95604228 ~ 95609786 (-)
G207959 NA other downstream 527075 95523968 ~ 95524227 (-)
G207858 LOC106561692 other downstream 642588 95377723 ~ 95408714 (-)
G208472 NA other upstream 41672 96134077 ~ 96134472 (-)
G208658 NA other upstream 329461 96421866 ~ 96422224 (-)
G209560 NA other upstream 1324416 97416821 ~ 97417188 (-)
G209802 NA other upstream 1408767 97501172 ~ 97502394 (-)
G209841 NA other upstream 1526454 97618859 ~ 97619212 (-)

Expression


Co-expression Network