LOC110502509 (LOC106561697)


Basic Information

Item Value
gene id LOC110502509
gene name LOC106561697
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 96129727 ~ 96370206 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960080.1
TTGGGGCACGAGAACACTCACACCCTTTCACGCACGGACATTTTCAGAGTTGATGACTGACATTTACAACGACCTAAAAGACCGATGAACATTACCACCGCAATTAACACTGGAAATCTCGGAGACAGCGGGTGCTAGTGCGTGTGGAATAATTCGGTTTCTCTAAAAAATGAACGGATAAGTTTTCAATTTATAACCAGAGCTCGTGTGGCGTCGTTAAAAGCTACACCTCGAAATATATTTGTGTTTTGAAAAGACAACTCCTGGAAATATTAATAAGGAACGTCGAGAGAAGATaagaaaaaaaacatcaaataagtgtgactgtgtgagagacagagcatCACAAAAGGAGGGCAGTAGCGCGCAGCGCGGGACGtatgtgttgatgatgatgatgtgatgcGAAGAATGAAAGACATGTCCTAGATCTGCTCTCCCTGCAATATGTCCTGAGTTGGTCTGTGACTGAAGCCTCCTGCCTCAGTACATTGCGTCTATTTTGGGGTGTATTTCATTATTTGCATTACTGTACCTGAATAAGAAACACAGATAGAGGAAAAAACCAATCCGGACAGTGTCGCCCTGTCACCGTGCGTATAATGGAGACTCGTTTTTTTATGACCGTGTGGTGAAATAATAGCCGACCTATGTAGCCGTTAATTCTATTGGCGATCTATTCTTTTTTTCAATGGATGATTGTGTCAGGGTTCTTAGTTCGTTCTGTCAATAACGCATCGGTAATAACTCATGCCATGTCCCATTACCCGATAGCCCTTCTGGTCTAGAGGTAGCTTTTATACTGCTTCATAGGCATACTTCCTTAATACTGCTATATGAGTGATGGCAATGCCAGTAGTAGAATGTGACAGTAGCAGTGGTGTAGCACATCTACggaacagtagcagtaacagcacCAGCGTTCGCGACAAAACCTCCAGGGCACCGGAGCGCAATGGTTATGTGAAAACACGTTTCATCCAGCCACTGCCCGACAGTCGAGATCGAGCTGGTGATTGCTCATATGGGTCGTGCATGGTGAGGCTCGTATTCAAGATATGGAGTTCCCAAAGACTCCGGCGTGTAGTATGTGTGGGCTCACTGTCTGTTTTTCTCGCTCTGCTGGTTAAATTAGCCGACTGGAGGACTGAGCTCAGTAGCAgtggtaacagtaacagcagGCTGCACTCCAGCTCTCCTGTTCATTTCGTGTCAGGCTACGCAGGGGAGTTGTTGCTAACTCTCTGGCATCTGATCTCGCCTGTATTTACCCTCGTATGTGCCTTCTTTTGGGTGGGTTTGTATTTGATCCGCTGCGGAGTGCTTATCCAAACCGCCCTTTTCCTCCTCACTCTTTGCCACCTGGGAGAGACAGCGGCGTGGGCTCTCGTGCACGGCGGGACTTGGACGGATGAACAACAGCCGTTTTCCTTCAGCACGTCAGCGGCCGCGGTCGTGCTCGCCTGCCTGGCAACCGGCACACTCATGGTAGCGCGGCTCAAGCACGGCATCTCGGTCATAGTGTTCGTAAGCGTCGTTCGGACTATCTCGCTCATCTCGCTGCACAAAGTCCGGGCCACTTGGAGACCTTACGTGGCGTACCTGGTGGGAGTGTTGGGCATCCTACTGGCGAGGTATGCTGATAGTCTACTTCCGAACCAAGGGATACCCAGGGAGGGCTGTACCCCCTCTGTGACTGGGGCGAGGGAAGGGGACGAGACCCCTGTGTTTAAAAGGCGAAGGAGGTCCAGTTCTGTGATCTCCACAGACATGGCACACAGTCAGTCCAACAGCAAGTCACACAGGAGGACCTCGCTGCCATGCATTCAGAGGGACCAGATGCCAGAATGGGACAACAAGAGAAGCTCAAGAGGATCTCAGTTGTTGGGCACCAGTGTGGTGGTGGATATAGCTGTGATGGGCGAGGCCCACGGTCTGATCTCAGACCTGCTGGCGGACCCCTCGCTGCCCCCCAACACCTTCACCTCCCTCCGTGCCGTCAGCAGCCTGCTCACCACTCAGCTCAACTTCCAGCCCCTGCACCGTCCGCGCCTCGCTCCCCTGGGCGTCAACCTGGGAGACGCCTACATCTGCTCCGACTCAGAGGAAGGATCTGAGAAGATAGGGGAGAAGACCAATACCTTACCTAAGCGTCTGCGGCGTAGCCTGCACCCGGGGCTATTGAGGAGGACCTCCTCTACATggaccaccaccacctcagctaCGGGCCTGCCCACCATCGAACCCGGACCAGTACGCAGGGCCAGCATCAGCATCAAACCCTTCCACGAACCGCTCGTCTGCAGCTGTGGGAGACCGTACATAAAGCTGAGCCATGGGGAGGGATCCATGGACAAAGGGGACAGGATACACCGGACAGAGGATCAGGTGGTGGCATCGTCAGACTACGACAGTACCCACGAGGCCAACCACAGCGACAGCAGCGACGTAGCGCCGACAGAGGAGGGGGACGCAGAAGGGGGCAAAAACACCCCCCAAAACCTCGTCATGCTACCTGCAGAGGAAAAGCCCCAGCTGGCCCCGGAGCCGTTAGTGATGGAGGACTTGGAGCCCCTAATGAGCCACCTCAACCAATGGAACTTCCCCATCTTCAGCTTGATGGAGAAGACCCAGGGCAAATGTGGCCGCATCCTCAGCCAGGTCTCTCACAGGCTTTTTGAAGACACAGGCCTATTTGAGACCTTCAAGATCCCGGTTCACGAATTCATGAACTACTTCCATGCTTTGGAGAATGGCTACAGAGACATACCATaTCACAACAGAATCCACGCTACAGACGTTCTCCATGCTGTCTGGTACCTCACTACCCAGGCCGTACCAGGTCTGCCCAGCCTCATCACTGACCATTGCTCTGCCAGCGACTCAGACTCTGACAGTGGCATCACGCACAGTCACATGGGCTACCTGGTGTCGAAGACCTACAGCGTGTCGGAGGATGGGTATGGTTGCCTGTCGGGGCTCATCCCAGCCCTGGAGCTCATGGCTCTCTACGTAGCAGCAGCCATGCATGACTACGACCACCCTGGCAGGACTAACGCCTTCCTGGTGGCCACAAGTGCACCACAGGCAGTGTTGTATAACGACAGGTCGGTGCTCGAGAACCACCACGCCGCCTCTGCCTGGAATCTGTTCATGTCCCGTCCGGAGTATAACTTCCTCGTCAACTTGGACCACGTGGAGTTCAAACGCTTTCGCTTCCTGGTCATAGAGGCCATTCTTGCCACTGACCTCAAGAAACACTTTGACTTCCTGGCAGAGTTCAATGCCAAGGTAGGTGATGACGTGACGAGGGGTATTGATTGGtccaatgagaatgacagactGCTGGTGTGTCAGATGTGCATCAAGCTAGCTGACATCAACGGCCCACTGAAACACAAGGACCTGCACCTACAGTGGACCAAGGGCATCGTCGATGAGTTTTATGAACAGGGTGACGAGGAGTCCAGCCAAGGTCTTCCCATCAGCCCCTTCATGGACCGCTCTGCTCCTCAGCTGGCTAAGCTCCAGGAGTCCTTCATCACCCACATCGTAGGACCGCTCTGTAACTCATACGACTCCGCAGCACTCATGCCCGGACGTTGGGTGGAGCCTAAccccgaggaggaggaggaggagcacgaggaagatgaagaggaggatacGACAGAGGATGAAGATGGGTCTACTAGCTCAGAGGCATCGCAGAAAGGCAAAGCAGCTCccaagaagaggaggaaagtgtTCTGTCAGATCACCCAGCACCTGATGGACAACCACGAGATGTGGAAGAAGGTGATCGCAGAGGAAACGCCCAAGCaaaacaatgtagctgagccaaTCCTATCCATccacgaggaggaggaggagccagggagcagggaggatgtagtggagggggaggagccagaagaggaaggggaggtgcCAGAGGAGGAAATAGACGACGAGTGGCCAGCGCCCCCGCAGGACGAGTCTGAACCTGCAGAAGAGGCTGGGCCAGAGTGAGGGCCCCAAAGGCTCGTGGCGAGTGCTATTCGGGATCCTTGGGATAttgctaccctaaaccctaacccctaccctaaacttaaccataaaccttacctaaccttaaccccttacctaaaccattttaaatgtaaacttaaatggggtagggatgtcccaaggatcccagatagcgaGGACCAAAGGTTCTTGGGAATGAAATAAAGCAGCCCCTATCCCGAGGCAGAACATGAAATTACTTTTTCTATCCTATTGACAAACAGGCTgactgattttatttttttttgccagCACATTCACTTAGACACAACACTGTAGAAGTTTGGGACATTGTGCCTAATGAAAATGTAACACAGGGTGGGAGATATTTACTTGTGTTTTACACATTTTATATATAAAAACACAGAATACAAGTCAGGTTCAGAAACATCGGTCAATCATCCTCTTGAGTAACTTTCCATTATTACAATAACCTACAGGATCATCTACTGGATGTAACAAACTGGTGTAATAGTTCACGAAATGCACTCTTTTTGCTACCGTCAAGAGTGGATTGAGACTTGGTCGTGAAGACCTCAAACCCATTGTGTAAACAACGGACTGCAGAGACTGCCGCCAATTTATATATACGAAATATTTTCTAAAATGCAATTATACTTAAACATCACATGCACCTGTACTCATGTGTTTTGTTTAGGGGGGGGGATTTTAAGTATTTTCTCTGGGTCTGATAATCTCAGTAATATGGTTCTATTTTAACTATGTGGATTGAGAAGGGAAAAATTTGACTGAACAGCTTCATACAAATCTACATTTTCCATCTTTATTATTGTTCTTTAATGGATTCCACATTGCATCTCACACCTATAATCTGTAAGCACACGACCGCAAGCATACCCTCTAGGTATCTTTTGGTTTTACTGACAAACTGAAACGGTCGGTATAGCACACCCTTTTAATATAGGCCCCTCTAGGATCTATGACATCGGCAGAACCATCAGCTGGTAACTTTTCTCATGTCATGGTACTCCAGGTGAACAGACCATATTTGACTTCAGCCTTCAGCCTTTTTGACCAATGGCTTGGTTCAGAGGAAGTTGGAACACACTACAGGGTCTTTTTTGACCAATGGCTTGGTTCAGAGGAAGTTGGAACACACTACAGGGTCTTTTTTGACCAATGGCTTCGTTCAGAGGAAGTTGGAACACActaaaaggagaggaggagaggagtcagaaaaAGACATGCTAGTACTTTAGGTCTTATGAGTGTTTCTCTAATACAGTTAATTGAAAACAGGCCTAGTGTGTAAGATAATGAGGTCCTATGACTATAAGGCATAGTTCCTCAACCTAACTCAAAGACAGGATTCTTCCTCCACTACCAGATAAACTGACTACATAGATCACCAGGAGACAATATACTGTTTTTACTACTTATTGACTATTGATTCTCGTTTCAGTAacccccctccttccctttccAA
>TU236019
TTTTACTGACAAACTGAAACGGTCGGTATAGCACACCCTTTTAATATAGGCCCCTCTAGGATCTATGACATCGGCAGAACCATCAGCTGGTAACTTTTCTCATGTCATGGTACTCCAGGTGAACAGACCATATTTGACTTCAGCCTTCAGCCTTTTTGACCAATGGCTTGGTTCAGAGGAAGTTGGAACACACTACAGGGTCTTTTTTGACCAATGGCTTGGTTCAGAGGAAGTTGGAACACACTACAGGGTCTTTTTTGACCAATGGCTTCGTTCAGAGGAAGTTGGAACACActaaaaggagaggaggagaggagtcagaaaaAGACATGCTAGTACTTTAGGTCTTATGAGTGTTTCTCTAATACAGTTAATTGAAAACAGGCCTAGTGTGTAAGATAATGAGGTCCTATGACTATAAGGCATAGTTCCTCAACCTAACTCAAAGACAGGATTCTTCCTCCACTACCAGATAAACTGACTACATAGATCACCAGGAGACAATATACTGTTTTTACTACTTATTGACTATTGATTCTCGTTTCAGTAacccccctccttccctttccAATAGACACAAAAAGTTCATTTTAgtttgcctttatttaaccaggtacgtcattgagaacacattctcttttACAGTAATGACCGTACAGGTACATGGTAACacaggatcacacacacacacacacacacacacacacacacacacacacacacacagtatacaatCTCTAAGCCATACAAGGAGGAACCATTTACTGTGAGGTGATTTTAAGGGAGCGGGCAGAGTAGCCCATAATGGCCCTAGCTTTGACAGCCAGTCTCCATcctagatggcaccctattccctatatagtgcactactttagaccaaggccctatagaaccctattccctatgtaatgcactactttagaccagagccctatagaaccctattccctatatagtgcactactttagaccagagccctaatagaaccctattccctatatataatgcactactttagacaagagccctatagaaccctattccctatgtagtgcactactttaaaccagagccctatagaaccctattccctatatagtgcactactttagaccaaggccttatataaccctattccctatatagtgcaatac
>TU236018
GAAAAATTTGACTGAACAGCTTCATACAAATCTACATTTTCCATCTTTATTATTGTTCTTTAATGGATTCCACATTGCATCTCACACCTATAATCTGTAAGCACACGACCGCAAGCATACCCTCTAGGTATCTTTTGGTTTTACTGACAAACTGAAACGGTCGGTATAGCACACCCTTTTAATATAGGCCCCTCTAGGATCTATGACATCGGCAGAACCATCAGCTGGTAACTTTTCTCATGTCATGGTACTCCAGGTGAACAGACCATATTTGACTTCAGCCTTCAGCCTTTTTGACCAATGGCTTGGTTCAGAGGAAGTTGGAACACACTACAGGGTCTTTTTTGACCAATGGCTTGGTTCAGAGGAAGTTGGAACACACTACAGGGTCTTTTTTGACCAATGGCTTCGTTCAGAGGAAGTTGGAACACActaaaaggagaggaggagaggagtcagaaaaAGACATGCTAGTACTTTAGGTCTTATGAGTGTTTCTCTAATACAGTTAATTGAAAACAGGCCTAGTGTGTAAGATAATGAGGTCCTATGACTATAAGGCATAGTTCCTCAACCTAACTCAAAGACAGGATTCTTCCTCCACTACCAGATAAACTGACTACATAGATCACCAGGAGACAATATACTGTTTTTACTACTTATTGACTATTGATTCTCGTTTCAGTAacccccctccttccctttccAATAGACACAAAAAGTTCATTTTAgtttgcctttatttaacc
>TU236174
TGTGACTGAAGCCTCCTGCCTCAGTACATTGCGTCTATTTTGGGGTGTATTTCATTATTTGCATTACTGTACCTGAATAAGAAACACAGATAGAGGAAAAAACCAATCCGGACAGTGTCGCCCTGTCACCGTGCGTATAATGGAGACTCGTTTTTTTATGACCGTGTGGTGAAATAATAGCCGACCTATGTAGCCGTTAATTCTATTGGCGATCTATTCTTTTTTTCAATGGATGATTGTGTCAGGGTTCTTAGTTCGTTCTGTCAATAACGCATCGGTAATAACTCATGCCATGTCCCATTACCCGAT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960080.1 False 5494 mRNA 0.50 15 96130311 96370206
TU236019 False 1155 lncRNA 0.61 1 96129727 96130881
TU236018 False 749 lncRNA 0.40 1 96130271 96131019
TU236174 True 309 lncRNA 0.42 1 96369435 96369743

Neighbor

gene id symbol gene type direction distance location
LOC110502500 LOC106561698 coding downstream 37906 96051302 ~ 96092405 (-)
LOC110533932 NA coding downstream 246632 95882131 ~ 95883679 (-)
LOC110500466 nampt coding downstream 409196 95703359 ~ 95721115 (-)
LOC110502485 LOC106561707 coding downstream 465808 95635896 ~ 95664503 (-)
parietopsin LOC106561711 coding downstream 498339 95628449 ~ 95632062 (-)
LOC110500576 NA coding upstream 263635 96633841 ~ 96640404 (-)
LOC110500541 LOC106561741 coding upstream 276924 96647130 ~ 96897073 (-)
pik3c2g LOC106561742 coding upstream 649385 97019591 ~ 97077900 (-)
LOC110502515 reln coding upstream 719001 97089207 ~ 97387953 (-)
LOC118937309 NA coding upstream 1124138 97494344 ~ 97496498 (-)
G208468 NA non-coding downstream 1077 96127169 ~ 96129234 (-)
G208469 NA non-coding downstream 3474 96125952 ~ 96126837 (-)
G208368 NA non-coding downstream 5723 96123042 ~ 96124588 (-)
G208361 NA non-coding downstream 12871 96109996 ~ 96117440 (-)
G208341 NA non-coding downstream 14562 96068831 ~ 96115749 (-)
G208629 NA non-coding upstream 17045 96387251 ~ 96387473 (-)
G208765 NA non-coding upstream 129611 96499817 ~ 96500344 (-)
G208769 NA non-coding upstream 134186 96504392 ~ 96504628 (-)
G208777 NA non-coding upstream 144360 96514566 ~ 96514766 (-)
G208781 NA non-coding upstream 147993 96518199 ~ 96518719 (-)
G208077 NA other downstream 297949 95829374 ~ 95832362 (-)
G207876 LOC106561706 other downstream 443447 95680851 ~ 95686864 (-)
G207884 NA other downstream 520525 95604228 ~ 95609786 (-)
G207959 NA other downstream 606084 95523968 ~ 95524227 (-)
G207858 LOC106561692 other downstream 721597 95377723 ~ 95408714 (-)
G208658 NA other upstream 51660 96421866 ~ 96422224 (-)
G209560 NA other upstream 1046615 97416821 ~ 97417188 (-)
G209802 NA other upstream 1130966 97501172 ~ 97502394 (-)
G209841 NA other upstream 1248653 97618859 ~ 97619212 (-)
LOC118936884 NA other upstream 1774114 98127948 ~ 98145517 (-)

Expression


Co-expression Network