lmo2 (rbtn2)


Basic Information

Item Value
gene id lmo2
gene name rbtn2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98424015 ~ 98426658 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021617578.2
CAAGTAGTCGTGAGCAGGAAGGGTGAAACGAAACCAGAGACCGAGCTAGGGGGCAGGAGCTGGTATTTAAAAGCACGACGCAGCCGCTCAATAACGGAACCGCGGTAACGTTCATTCTCAGGACAGAGCGCGTCTGGAGAAGAAGGGAATATAAATAAGAACTGAAGAGGAAAGGGAGACTCAGTCAAGCAACCTTTGCTGATTTTAATTATTCTAGTGTTTGAAGACATATATACAGTCGCAATGGAATAAAAAAAATGCACTTATGAAAGACGAAGGCTACACCGAATTTCACCGCGGTTTCTCAATTGCCTGAGGAAATGTACAGAATAGCCTCCATCATTGAAAATGCGTCACATGTCAGGATGATCTTCGTTGGACATAGACTGCTGATTGAAATTATGTCATATAAAATGAAGGCAAATTCCGCGCGCAACTGACGTCTAGGGCGACATTATATCAGAGCAGGTGCAGTGTGTGTCCCTTCGAGATTTACCGTTACACGCGTGTTCCGAAGATTTAACTGTGACCGTGGTGTGGGCCTGCCAGGTTGATCACAGAGAAGAGAAGCGGGAACATCTTGATGTCAACCTGAGAAATAAAACATACTGGGAAAATGTCATCTGCAATTGAAAGGAAGACGATGGAGGCTAACGAGGAGCCGGTGGACGAGGTGTTACAGATGGCCCCGTCCCTCCTGAACTGTGGGGGTTGCCAGCAGAGCATCGGGGACAGGTTCTTCCTGAAAGCCATAGAGAAGTACTGGCATGAGGACTGTCTGAGCTGTGACCTGTGTGGCTGCAGACTGGGAGAGGTGGGACGAAGACTCTACTACAAACTGGGACGTAAGCTCTGTCGCAGAGACTACCTCAGGCTGTTTGGACAGGACGGGCTGTGTGCTAGCTGTGAGAAGAGAATCAGAGCGTTTGAGATGACCATGCGTGTGAGGGACAAGGTCTACCACCTGGAGTGTTTTAAATGCGCGGCCTGCCAGAAACACTTCTGTGTCGGGGACCGTTACTTGCTCATCAACTCAGACATTGTGTGTGAGCAGGACATCTTTGAGTGGACCAAACTCAACAACAACATGGTTTAGCAGATTCATGAACACTCTAGAACATTCTACAACACTTTAGAACACCTCAAAAACAAGGTGTAGAACACTCTAGAACATTCTACAACACTCCAGAGCACCTCAAAAACATGTTGTAGAAAACTCTAGAACATTGTAGAACACAAAGATGAGATGGTTTTGATTGTGATCGTGATCTCTCCATTTGGGATCAACAGCATGATAAAATATCTCCAGATGTACAGCAAGATAATAGATCTCAAACTTTCGGACAAAGGTCGCCACATACAGGCTCTCTTGTACCTCTCAAATCTGTTAGATGTTTGAAGAGAGTTGTTTCACCATTGATCTGTACTGGAGGCTAAATGAAGGCTCGATCCACCAGTGAATGGAGAACTGGTTCCACCCTTTCAAtgcaaaaaaaaaggaaaatgtaATAATGCAATAATCTATGTGCTCATTGCAGAAATCTCAATATTTCTTGTATCATACAGTTGTAATAGAGATTTGCTCATTGATCTAAATGATGAGCGATGTCACTGGAATTTGTTGTAGTCCAACACTGTTATTTCACCTCTAGAGAAATATGTATTATGACATTTGTTATGAATATATATAAAGTGTTATGTCCAAAAAGGTCTGGTCCATTCCAAAGTAATACATTCGTAAAGTAAAGGTCTGTTTGGGGAGTCCACATGCGCCCCCTAGTGGCCAAGTTCAAAATACAAGTTTCCAATCTTTA
>NM_001160508.1
ACCGAATTTCACCGCGGTTTCTCAATTGCCTGAGGAAATGTACAGAATAGCCTCCATCATTGAAAATGCGTCACATGTCAGGATGATCTTCGTTGGACATAGACTGCTGATTGAAATTATGTCATATAAAATGAAGGCAAATTCCGCGCGCAACTGACGTCTAGGGCGACATTATATCAGAGCAGGTGCAGTGTGTGTCCCTTCGAGATTTACCGTTACACGCGTGTTCCGAAGATTTAACTGTGACCGTGGTGTGGGCCTGCCAGGTTGATCACAGAGAAGAGAAGCGGGAACATCTTGATGTCAACCTGAGAAATAAAACATACTGGGAAAATGTCATCTGCAATTGAAAGGAAGACGATGGAGGCTAACGAGGAGCCGGTGGACGAGGTGTTACAGATGGCCCCGTCCCTCCTGAACTGTGGGGGTTGCCAGCAGAGCATCGGGGACAGGTTCTTCCTGAAAGCCATAGAGAAGTACTGGCATGAGGACTGTCTGAGCTGTGACCTGTGTGGCTGCAGACTGGGAGAGGTGGGACGAAGACTCTACTACAAACTGGGACGTAAGCTCTGTCGCAGAGACTACCTCAGGCTGTTTGGACAGGACGGGCTGTGTGCTAGCTGTGAGAAGAGAATCAGAGCGTTTGAGATGACCATGCGTGTGAGGGACAAGGTCTACCACCTGGAGTGTTTTAAATGCGCGGCCTGCCAGAAACACTTCTGTGTCGGGGACCGTTACTTGCTCATCAACTCAGACATTGTGTGTGAGCAGGACATCTTTGAGTGGACCAAACTCAACAACAACATGGTTTAGCAGATTCATGAACACTCTAGAACATTCTACAACACTCCAGAGCACCTCAAAAACATGTTGTAGAAAACTCTAGAACATTGTAGAACACAAAGATGAGATGGTTTTGATTGTGATCGTGATCTCTCCATTTGGGATCAACAGCATGATAAAATATCTCCAGATGTACAGCAAGATAATAGATCTCAAACTTTCGGACAAAGGTCGCCACATACAGGCTCTCTTGTACCTCTCAAATCTGTTAGATGTTTGAAGAGAGTTGTTTCACCATTGATCTGTACTGGAGGCTAAATGAAGGCTCGATCCACCAGTGAATGGAGAACTGGTTCCACCCTTTCAAtgc

Function

NR:

description
rhombotin-2

GO:

id name namespace
GO:0030218 erythrocyte differentiation biological_process
GO:0061304 retinal blood vessel morphogenesis biological_process
GO:0035162 embryonic hemopoiesis biological_process
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15612 LMO2; rhombotin-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021617578.2 False 1814 mRNA 0.44 3 98424015 98426658
NM_001160508.1 True 1153 mRNA 0.47 4 98424340 98426375

Neighbor

gene id symbol gene type direction distance location
LOC110500713 LOC106561713 coding downstream 71530 98313023 ~ 98352485 (-)
LOC118936884 NA coding downstream 279004 98127948 ~ 98145517 (-)
LOC118943870 NA coding downstream 663215 97759882 ~ 97761086 (-)
LOC118944211 NA coding downstream 666352 97757564 ~ 97757663 (-)
LOC118944208 NA coding downstream 668288 97755630 ~ 97755727 (-)
LOC110500720 LOC106561717 coding upstream 48076 98474734 ~ 98513861 (-)
edc3 LOC106561715 coding upstream 95340 98521998 ~ 98535690 (-)
LOC110500748 LOC106561725 coding upstream 161258 98587916 ~ 98601250 (-)
LOC110502529 LOC106584711 coding upstream 216332 98642990 ~ 98689136 (-)
LOC110500839 LOC105018309 coding upstream 266098 98692756 ~ 98723102 (-)
G210528 NA non-coding downstream 20648 98403135 ~ 98403367 (-)
G210523 NA non-coding downstream 41521 98382231 ~ 98382494 (-)
G210521 NA non-coding downstream 44630 98379159 ~ 98379385 (-)
G210243 NA non-coding downstream 57340 98366438 ~ 98366675 (-)
G210195 LOC106600457 non-coding downstream 122602 98301093 ~ 98301413 (-)
G210536 LOC106561714 non-coding upstream 11242 98437900 ~ 98451690 (-)
G210556 NA non-coding upstream 45051 98471709 ~ 98471910 (-)
G210569 NA non-coding upstream 93780 98520438 ~ 98520783 (-)
G210577 NA non-coding upstream 109912 98536570 ~ 98536774 (-)
G210580 NA non-coding upstream 112735 98539393 ~ 98539655 (-)
G209841 NA other downstream 804803 97618859 ~ 97619212 (-)
G209802 NA other downstream 921621 97501172 ~ 97502394 (-)
G209560 NA other downstream 1006827 97416821 ~ 97417188 (-)
G208658 NA other downstream 2001791 96421866 ~ 96422224 (-)
LOC118943885 LOC106561728 other upstream 491790 98914015 ~ 98946069 (-)
LOC118943882 LOC106561728 other upstream 515816 98936783 ~ 98944041 (-)
G210765 NA other upstream 599074 99025732 ~ 99026118 (-)
G211127 NA other upstream 696575 99123233 ~ 99123658 (-)
LOC118936886 NA other upstream 1189018 99615676 ~ 99619142 (-)

Expression


Co-expression Network