edc3 (LOC106561715)


Basic Information

Item Value
gene id edc3
gene name LOC106561715
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98521998 ~ 98535690 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960421.1
aacaaaaacataaatgtcATTTTGGATTTTGTATTTCCTGTTTGGTCAAATAGATGCGCCCTGCAACCCTgatgacttttattttgaaatgtgTTTGGCTACGCGCGCCGGAAGTTGTGCGACTCTAGCTCATGCTTCTGAAACAAAGCTAAGGACGCttgctttgatcatttgaattaTAATAGCCCATTTGGGCAACTGTTCAAATATTACATTAAAACCGTCGTTCTACGGAATATCACAAAAGACAGCATGGCTGCAGACTGGTTAGGTAGTCTGGTGTCGATAAACTGCGGAGAAACTCTGGGGGTGTACCAAGGCGAGGTGTCGTCTGTGGACCAGTCCAGCCAGACCATCTCCCTCAAACAGCCCTTCCACAATGGAGTCAAGTGCCCTGTGCCCGAGGTCACTTTTAGTGCCGTGGACATCAAGGAGCTGAAGGTTCTGGATATAGTGAGTGGTAGAGGTGGTGTGGTTCCGAAGAGCAGCGATCCGGTCTCAGTCCCACACCGAGGACACCATAAGACCCAGGACAGGCTGGCTTCACCGCAGCAGCAGTGCTCAAAAAGCTACGGCGATAAACACCTGGAGGTGCCGGGCCAGTCCAAGGGTTTCCGACGAAGACACAACTCCTGGTCGTCCAGTAGTCGGGGCGCCAACCAGGTCACCCCGAAGAAGAGCGTCGTGAAGAACGGAGGAGGTGGTCAGAGGCAGCACAGGGACGATGAGTGTTTCGGGGACAATATGGACGACGGGCTTGACACGGACTTTGACTTCGAGGGGAACCTGGCGCTGTTCGACAAAGCTGCCGTGTTCTCACAGATCGCCGGGTCGGATCGCCGCGGTAACGGGGCCCGGTCGCGCGGTACGCCGCAAGAGCAGCAGCCGTCGCAATACCGCCACGACAAGAACATTCTGGAGACCAAACCTGTGGTTTACAGGCAGATAGTTGTCCCTCAGCCTGGGGCCAAAGAGTATTGCACTGACTCGGGCCTGGTGGTGCCCAGTATTTCCTATGAGCTGCACAAGCGTCTGTTGTCAGTAGCTGAACGTTATGGCCTCTCATTGGAGAGGAGGCTGGagatgacaggtgtgtgtgccagtCAGATGGCCTTGACGCTGCTGGGCGGGCCCAACAGACTGACCCCTAAGAATGTGCACCAGCGGCCCACTGTGGCCTTACTCTGTGGGCCTCACGTCCAGGGGGCCCAGGGTATCAGCTGTGCTCGTCACCTGGCCAACCACGAGGTGGAGGTCATAATCTTCCTGCCTGACTTTGTCAAGGTGCTGGATGCCGTCTCCAGCGAGATCACGCTTTACACCAAGACAGAGGGCAAACAGGTCTCCAGTGTTGAAGAGCTTCCGGACAGCCCCGTGGACCTTATCATCACCTGCCTGGACTGTCACGAGGACACCTTCCTTATGGACCAGCCGTGGTACCAGACCGCTGTAGACTGGGCCAACCAGAACAGAGCTCCCGTGCTCAGCCTGGATCCTCCAGTCAGCGGACAGGGCCACGCCGTAGAAGCCAAGTGGACACTGTCTCTGGGTCTCCCGCTACCGCTGTCAGAGGGAGTAGGTAGGGTTTACCTGTGTGATATTGGGGTTCCCCGACAGGTGTTCCAGGAAGTTGGGATCAAGTATCATTCTCCGTTCGGTTGTAAGTTTGTGGTGCCGTTGCACTCTGCGTAACTGAAGGGTTTCGAATTACACATGGACTCTTGGGCGCCCCCTACGTCTCTTGGGCGCCCCCTACGTCTCTTGGGCGCCCCTCTACGTCTCTTGTTCTGAGAAGTAATTTGAACTGTGTTTAACTGGACTGCACTGACCTTTCACCTTCAGATTGAACTTTGAACTCTCTCACTGACCATTCAGGGTAGTGTTCACTATGTGTGAAACTAAAGAAAACTCTGAAATTAAACTGGTGGAAGTTAGTATCTGAACTTAAGAAATGCTTGTTGGAGTGCCCTAATAAACACAACCCCTGGGTTTGAGGGATTGAC

Function

NR:

description
enhancer of mRNA-decapping protein 3-like

GO: NA

KEGG:

id description
K12615 EDC3; enhancer of mRNA-decapping protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960421.1 True 2003 mRNA 0.54 7 98521998 98535690

Neighbor

gene id symbol gene type direction distance location
LOC110500720 LOC106561717 coding downstream 8137 98474734 ~ 98513861 (-)
lmo2 rbtn2 coding downstream 95340 98424015 ~ 98426658 (-)
LOC110500713 LOC106561713 coding downstream 169513 98313023 ~ 98352485 (-)
LOC118936884 NA coding downstream 376987 98127948 ~ 98145517 (-)
LOC118943870 NA coding downstream 761198 97759882 ~ 97761086 (-)
LOC110500748 LOC106561725 coding upstream 52226 98587916 ~ 98601250 (-)
LOC110502529 LOC106584711 coding upstream 107300 98642990 ~ 98689136 (-)
LOC110500839 LOC105018309 coding upstream 157066 98692756 ~ 98723102 (-)
LOC110500636 NA coding upstream 260159 98795849 ~ 98808194 (-)
LOC110500630 NA coding upstream 267315 98803005 ~ 98808340 (-)
G210569 NA non-coding downstream 1215 98520438 ~ 98520783 (-)
G210556 NA non-coding downstream 50088 98471709 ~ 98471910 (-)
G210536 LOC106561714 non-coding downstream 70308 98437900 ~ 98451690 (-)
G210528 NA non-coding downstream 118631 98403135 ~ 98403367 (-)
G210523 NA non-coding downstream 139504 98382231 ~ 98382494 (-)
G210577 NA non-coding upstream 880 98536570 ~ 98536774 (-)
G210580 NA non-coding upstream 3703 98539393 ~ 98539655 (-)
G210588 LOC100194703 non-coding upstream 22883 98558573 ~ 98568696 (-)
G210590 NA non-coding upstream 31664 98567354 ~ 98568156 (-)
G210594 NA non-coding upstream 41417 98577107 ~ 98577323 (-)
G209841 NA other downstream 902786 97618859 ~ 97619212 (-)
G209802 NA other downstream 1019604 97501172 ~ 97502394 (-)
G209560 NA other downstream 1104810 97416821 ~ 97417188 (-)
G208658 NA other downstream 2099774 96421866 ~ 96422224 (-)
LOC118943885 LOC106561728 other upstream 382758 98914015 ~ 98946069 (-)
LOC118943882 LOC106561728 other upstream 406784 98936783 ~ 98944041 (-)
G210765 NA other upstream 490042 99025732 ~ 99026118 (-)
G211127 NA other upstream 587543 99123233 ~ 99123658 (-)
LOC118936886 NA other upstream 1079986 99615676 ~ 99619142 (-)

Expression


Co-expression Network