LOC110502529 (LOC106584711)


Basic Information

Item Value
gene id LOC110502529
gene name LOC106584711
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98642990 ~ 98689136 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580609.2
ATGGTTGACGACGGAGGAGAATACGGTGGTGGCGACAAGGACACCAAGAAGAAAAGTACCGGTATCAGGCTGAAGTATCTCCCTCCTCATGGACCTTCATCCCCCACCAGCAGTTGGAAGAGCAACGGGGACCGGGACCCCAAGAGCGGAACCGCCGGAGACTTGGAAACGGACGTTGCCATCAAGACCAACTTGAATGGGGACTGTCGTCTGGTCAGAGGTCGCCTTTCCTCCATCACTGGCCGAAACACTCTTGGGTCAGATCCAGCTGAGCAGCGGAGGCTGATCTCCGAGGCAGACACCGGTGCTAACGAAGAGAGTTACCCCGGAGGGGGCGAGCTGGGAGAGCAGGGTTCCGGCGGTCGCAGTGCTAGTGCACATCGCCGATCGTCCGTCTTCGATCAGTCCACTTTCATCAAGTTAGAAGGAACCGAACCGATCATGTCAGACGAAGCAGAGCAGTTGTACCGGGCGGGCTTCATGCACCGGCAGTTCGGGGCGATGCTTCAACCGGGAGTCAACAAGTTCTCTCTGAGAATGTTGGGGAGCGAGAGGGCCGTGGAACACGAAAGGGAACGCGTCAAGTCTGCAGGATTTTGGATCATTCACCCATACAGTGATTTTAGGTTCTACTGGGATCTGATAATGCTGTTCCTCATGGTGGGGAACCTCATCATCATCCCTGTGGGCATCACCTTCTTCAAGGACGAGCACACTCCCCCCTGGATCGTCTTCAACGTCATCTCAGACACCTTGTTCCTCATCGACCTCGTCCTCAACTTCCGGACGGGCATCGTCAAGGAGGACAACACCGAGATCATCCTGGACCCACAGACCATCAAGATCAAGTATCTGAAGAGCTGGTTCATGGTGGACTTCATCTCGTCCATACCAGTAGATTACATCTTCCTCATCGTGGAGACCAGGATCGACTCAGACTTCTACAAGACGGCCCGGGCGCTGAGGATCGTGCGGTTTACGAAGATCTTGAGTTTGTTGAGGCTCCTGAGGCTGTCCAGACTCATTAGATATATACACCagtgggaggagGTTTTCCATATGACCTATGACCTGGCCAGTGCCATGGTGAGGATTGTGAACCTGATAGCTATGATGCTGCTGTTGTGTCACTGGGATGGATGTCTGCAATTCCTGGTTCCCATGCTGCAAGAGTTCCCCTCTGACTGCTGGGTCACCAGAAACAAGATGGTGAATGACACGTGGGGCCAGCAGTATTCCTATGCCCTGTTCAAGGCTATGAGTCACATGCTGTGTATCGGGTACGGTATGTACCCTCCTGTGGGCCTGGTAGACGTTTGGCTCACCATCCTCAGTATGATCGTGGGAGCCACTTGCTATGCCATGTTCGTAGGCCATGCTACCGCTCTGATCCAGTCACTGGATTCGTCCCGACGTCAGTACCAGGAGAAGTATAAACAGGTGGAGCAGTACAtgtccttccacaagcttcctgcCGGCATGCGGCAGCGGGTCCATGACTACTACGAACATCGCTTCCAGGGCAAGATGTTTGACGAGGAGAGCATTCTGGGGGAGCTGAACGAACCGCTCAGAGagGAGATCGTCAACTTCAACTGTCGTAAGCTGGTGGCTTCGATGCCTCTGTTCGCCAACGCCGACCCCAACTTTGTGACGTCAATGTTGACCAAGCTGCGTTTCGAGGTGTTCCAGCCCATGGATAGCGTTGTTATGGAAGGGACCGTCGGCAGAAAGATGTACTTCATCCAACACGGGGTGGTCTGCGTCATCGCCAagggcaacaaagagaccaagcTGTCTGACGGGTCCTACTTTGGAGAGATCTGCCTGCTGACTCGAGGCAGAAGAACGGCCAGTGTTCGCGCTGAGACCTACTGCCGGCTGTACTCTCTGTCTGTGGACAACTTTAACCAGGTCCTGGAGGAGTACCCCATGATGAGACGGGCCTTCGAGACCGTGGCTCTGGACCGGCTGGACCGCATAGGAAAGAGGAACTCTGTGCTCCAACACAAAGTCACCCAGAACTCAGGAGCTGTGAACCTCCTAGAGAACGCGATCATCCAGAGGATTGTACAACAAGACCGGGACATGGCCATCCAGAGCaacatctctctcctgtccctggaTGCCGACGCCCCATCTCCCACCTCAACCCCGGGGGTCATCTGGGCTCCCTTGGTCCAGGGCCCCCTCCAGACCGCTGCAGCCACAACCTCTCTGGCTCTGGCCTTCTCCCACTCCCATCTCCACGCCCAGCTCCCTCCGATCCTCTTTCACCGTCCGCTCTCTGTCTCCGAGTCATTCAAGGATCCTAGAGGCCACCGTCTGCAGAGGGGCATGTTTGTGGGCGTGTCCAGTGGCTCCGGGGCTGCGCCTCCGGACAGTTCTGTGATGTTTCGTTCTGGAGTGGACACTCCAATATTAGCCTCGCTCCGGGCGCAGCATTTAGTCTCCACAGCCTCCTCCATGTATCCTCTGTCACCTCTGACCTCCATGTACCATCCCACCTCCTCCATCACCTCCACCGACATCCAGGCTCAGCCCAGCAGagcctctcccttccccctggGCCAGGCCTCCATCCGGGAgtatccaccctcctcctccacctccacctgcaTGGCGCAGCTCCAGCACCACCACCCATACGGCCCACCAGGGACCCACCAGCAGGAGGCATCAGGGAGGCCCACCATGGGCACGCCGAGATACCCAGCCCACTCAGCCCCCTCTGGTTCCACCCTAAGCCCTCTCATCTGTAGCCCTGTCAGCCCCATCCTGAGCCAGCTACAGAACTCTCACACTACCAGcgctcagcagcagcagcagcacgtCAAGATGGGACCTGGTCATCAGGAGAGAGCaggccacctcctcctcccccactgtCCCTACACGACCACAAGCCCTAGCAACCCCACCCAGCACCACAGCTCCAGTGGGTTTCTATCTATATCTATCCCAGAACAGGCCAGCGTTGGGGGTGTTGGAGGTGTTGGAGGCGTTGGAGGTGTTGGAGTCCCATCCTCCCTGGTGCATCACAGTCTGGCAGGCCTCCACCCCGGCCTCCACCCCGGCCTCCACCCCAGTCTCCTCCCACAGGTTCTCCCAGAGCACTCTGCTCATTCTTCCCACTTTGCCCTGGCCTCGCTGGCCCAGTACGGGTCAGGGGATGGCTCCCCGGCCTGTACCCCACCGGTAACACACAGCCCCACCATCCAGAGCCCGCTGACAGGCAGGACGGTGCTTCAGCTCCACAGCCAGCTCCACAGCCAACCCTCCAGCGCCAATGGCTCTCACAGCTCCCTCACCCCACAGACATCATGCCCTCCCCAGGTCgatgggagagggcagagagcagagtCTCTGGTGGATCTCTTCACGCAGGATGTCAGGACTATTTCCACTGTTTCCACCTCGGGCTCACACACCTATCTACCCCAGGAAGGGGCTCTCTCCATACCGCCTCTCTCCATATCTTCAGGGGGGGGGCTTGGTTCCTCCCTCCCCATGGTGGATGGCAGCAGTAATAAATGGTACAGCCCCACCCCAGGGCACGCCACTCCTCTGAGTCACTACACTCCCATGGGATCGGAACCTCCAACTGCCGTGAGCCAAGAAGCACCGAACTCTTCGCATCCCAACCGCAGTCGTCCTGTTACATCCGGGGCAGATTACACAGTCTCCAATCTCCCTTCCAACTTGTGA

Function

NR:

description
potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3-like

GO: NA

KEGG:

id description
K04957 HCN4; hyperpolarization activated cyclic nucleotide-gated potassium channel 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580609.2 True 3708 mRNA 0.58 8 98642990 98689136

Neighbor

gene id symbol gene type direction distance location
LOC110500748 LOC106561725 coding downstream 41740 98587916 ~ 98601250 (-)
edc3 LOC106561715 coding downstream 107300 98521998 ~ 98535690 (-)
LOC110500720 LOC106561717 coding downstream 129129 98474734 ~ 98513861 (-)
lmo2 rbtn2 coding downstream 216332 98424015 ~ 98426658 (-)
LOC110500713 LOC106561713 coding downstream 290505 98313023 ~ 98352485 (-)
LOC110500839 LOC105018309 coding upstream 3620 98692756 ~ 98723102 (-)
LOC110500636 NA coding upstream 106713 98795849 ~ 98808194 (-)
LOC110500630 NA coding upstream 113869 98803005 ~ 98808340 (-)
LOC110502520 LOC105018371 coding upstream 130645 98819781 ~ 98832865 (-)
LOC110500681 scamp5 coding upstream 153301 98842437 ~ 98854773 (-)
G210623 NA non-coding downstream 1275 98639694 ~ 98641715 (-)
G210628 NA non-coding downstream 4444 98638209 ~ 98638546 (-)
G210608 NA non-coding downstream 52614 98590028 ~ 98590376 (-)
G210607 NA non-coding downstream 53086 98589659 ~ 98589904 (-)
G210683 NA non-coding upstream 22010 98711146 ~ 98712557 (-)
G210695 NA non-coding upstream 53342 98742478 ~ 98749276 (-)
G210694 NA non-coding upstream 55931 98745067 ~ 98754802 (-)
G210693 NA non-coding upstream 76268 98765404 ~ 98767695 (-)
G210665 NA non-coding upstream 95192 98784328 ~ 98785563 (-)
LOC118936884 NA other downstream 497473 98127948 ~ 98145517 (-)
G209841 NA other downstream 1023778 97618859 ~ 97619212 (-)
G209802 NA other downstream 1140596 97501172 ~ 97502394 (-)
G209560 NA other downstream 1225802 97416821 ~ 97417188 (-)
G208658 NA other downstream 2220766 96421866 ~ 96422224 (-)
LOC118943885 LOC106561728 other upstream 229312 98914015 ~ 98946069 (-)
LOC118943882 LOC106561728 other upstream 253338 98936783 ~ 98944041 (-)
G210765 NA other upstream 336596 99025732 ~ 99026118 (-)
G211127 NA other upstream 434097 99123233 ~ 99123658 (-)
LOC118936886 NA other upstream 926540 99615676 ~ 99619142 (-)

Expression


Co-expression Network