LOC110500839 (LOC105018309)


Basic Information

Item Value
gene id LOC110500839
gene name LOC105018309
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98692756 ~ 98723102 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960449.1
ctcctcatcctgtgGATGACTCCACTGCTAAtcctactccactactccacctctacagcTGGCTTTGTGAAGTCTCCCCTGTCTGAGACCAAACTAACAGGGGACACCTTTGAGTTGTACTGTGACGTGGTCGGTAACCCGACCCCAGAGGTTCAGTGGTGGTACTCCGAGATCAACCGGGCCGACTCTTTCCGCCAGCTCTGGGACGGCGCCCGTAAACACCGCGTCTCCATCAACACGGCGTACGGCACCAACGGCGTGAGCGTTTTGGGCGTGACTCGTCTCGGCCTGGAGGATGCTGGGACGTACGAGTGCCGGGCCAGTAATGATCCAAGGAGGAATGATCTGCACCAAAACCCTGCCACCACCTGGATCAGAGCACAGGCCACCGTTACTGTGTTGCAGAAACCGTCAATCAACTCGTCGGACCATATCACGCTGCCAGTTGATCACTACAGCCTGCCCCTCACCCTGCAGTGCAACCTAACTTCAGCCCACAGCGCCCACAGCGAGAGTTTCTGGATGAAGAATGGGGAGGAGATCAAAGAGACCCGTGGAGAGAGGGCCAACACCGAGTACTACCTGAAGAAGCCCAGAGGAGAGGATGCAGGGGAGTACATGTGTGTCTACACCTTTAACATGGCTCCGCCTGCTAACGCCACCATCGAGATTAAAGCTGGTCCTGACATCACAGGCCACAAGCGTAGTGACAATAAGAACGAGGGCCAGAAGGCCCTGCTCTACTGTAAGGCcactggctacccctaccctatCTGGACCTGGCACAAACTGGACAATGGGTTCTACGCGgaCATTGAAAACTCCTCTGGCCGTTTCTTCATTAACAACAAAGACAACTACACTGAGCTGAGCATCATCAACCTGGACATCGGCTCCGACCCGGGGGAGTACCAGTGTAACGCCACCAACATGATCGGCACCTCGTCCGTGGTGTCTGTGCTGCGGGTCCGGAGCTACCTGGCCTGGCTTTGGCCTCTGCTGGGCGTCCTGGCCGAGGTCATTATCCTGGTCATCATCATCGTGGTCTATGAAAAACGCAAGAAGCCAGACGACATACAAGACGATGACGAACCAGCTGGACCAATGAAAACTAATTCCACCAACAATCACAAAGACAAGAACCTTCGTCAGAGGAACACAAACTGAGCACACTGATAATAACATATTATACATGTATGTATCGACCATATGAAAGTAACCAGGAAAAGGGATTTATAGAAATGTGTTAATAAGAATTTATCTGCCAATAAAACGAcgtagaagaagaagaggaggaggaaggagctaCTGTACATGTCTGTATTGATTGATTATTGATGAGGCATGCCTTCTGATTTTGATTATCTAGCTATCGGGTGAAGAATGTGATCAATGAACGTGATCCCATAGCATTATGAATGACTTATGAAGTGTCTATGGAAGCATTATAACCATTGTTTGCTGCATGCAGTTATTGATTGTCGCTGTTTATTGATCgttttgatttgattatttagTCTGATCAAATTCTTATCATTTTTCCGATTTTTACTCAATTCTGAAGTAATGCATGCAAGGTATTCTAACTTTCTGTTTGGTCCCGGACCTGACATGGCTTTtttgactgtgtcccaaatgacactctttttccctatatagtccCCCGCCCCCCAAacgtctctggtcaaaagtactgcactctATAGGGCAGGAGTATTCAAATCTTATCATACAAGCTTATCATACAAGCATACAAGAACTGATGTTTTTTTTCGGTTTTTCTACCTGTTAATGCATTTGACCTACCTGGTGTTccaggtctaaaccaggcccCCCGGATCAAAGAAAAAGGAGTGGAAATGGTTTCAAAGTCCAGATTTGAATGTGAATGGAATgatatggaatagggtgtcacttgGGACACAGGCTTGTTTTTTTGTTTACTCAGATAATAGATAATCACTATTTGTGTTGATTATGAGAAGCTAAAGACTTCGGCACCAATTATAATCTGGTATGACAGTAGATCTGTACAGTTTATCATTCTGCCGCATACCATTTTATAAATCGGTTACTTATTCATTCATATTTTATCAGATCACATCTGGTTTCGCGTTTTAGTAAGGGCTTTGCAATGTCCCTGTCTTTTTGAATTTGATTGAAAATTCCTATATTTaacatgtactgtattgtatgtatCCAACCACCTTATGTAACAATACATGTAGAGTAATATGAAGGATATTCATTCATGAGATGCACTTACATTTTGCAAAAATAATGGAAATAAAAAAAGATCTCTATATAAAGTTAATTTAGTATGTAATTGTAACAACTCCTCCTAATCATTCTAACTGCTGTGTTTAACTGAAATTAAAgtgtgtattgtgtatagatAGCATGGCTATTATCCTATGCAATAATAATCAATATTGATATTAATATATACAAATCCCTCTTAGCAGCTTTTAGATTCTCTATGTTGATCTAGAATGATCTTTAGAGCATTGATAGATAGCGTACCGGACAGCTTGTTGATCTTTATAGTTGataatgttatacagtatatcTAGAAGTTGGAGCTAGGTAGGAGGCAGTGCGACAACAGGAACTATGTCATGTATGTCAAGATTGATTGACACTTGTGATTGATTTTGGGATTGCTTTACAAGTCATTTTTAATAATAAAAACTTTAAAAATAAA
>XM_036960450.1
ctcctcatcctgtgGATGACTCCACTGCTAAtcctactccactactccacctctacagcTGGCTTTGTGAAGTCTCCCCTGTCTGAGACCAAACTAACAGGGGACACCTTTGAGTTGTACTGTGACGTGGTCGGTAACCCGACCCCAGAGGTTCAGTGGTGGTACTCCGAGATCAACCGGGCCGACTCTTTCCGCCAGCTCTGGGACGGCGCCCGTAAACACCGCGTCTCCATCAACACGGCGTACGGCACCAACGGCGTGAGCGTTTTGGGCGTGACTCGTCTCGGCCTGGAGGATGCTGGGACGTACGAGTGCCGGGCCAGTAATGATCCAAGGAGGAATGATCTGCACCAAAACCCTGCCACCACCTGGATCAGAGCACAGGCCACCGTTACTGTGTTGCAGAAACCGTCAATCAACTCGTCGGACCATATCACGCTGCCAGTTGATCACTACAGCCTGCCCCTCACCCTGCAGTGCAACCTAACTTCAGCCCACAGCGCCCACAGCGAGAGTTTCTGGATGAAGAATGGGGAGGAGATCAAAGAGACCCGTGGAGAGAGGGCCAACACCGAGTACTACCTGAAGAAGCCCAGAGGAGAGGATGCAGGGGAGTACATGTGTGTCTACACCTTTAACATGGCTCCGCCTGCTAACGCCACCATCGAGATTAAAGCTGGTCCTGACATCACAGGCCACAAGCGTAGTGACAATAAGAACGAGGGCCAGAAGGCCCTGCTCTACTGTAAGGCcactggctacccctaccctatCTGGACCTGGCACAAACTGGACAATGGGTTCTACGCGgaCATTGAAAACTCCTCTGGCCGTTTCTTCATTAACAACAAAGACAACTACACTGAGCTGAGCATCATCAACCTGGACATCGGCTCCGACCCGGGGGAGTACCAGTGTAACGCCACCAACATGATCGGCACCTCGTCCGTGGTGTCTGTGCTGCGGGTCCGGAGCTACCTGGCCTGGCTTTGGCCTCTGCTGGGCGTCCTGGCCGAGGTCATTATCCTGGTCATCATCATCGTGGTCTATGAAAAACGCAAGAAGCCAGACGACATACAAGACGCTGGACCAATGAAAACTAATTCCACCAACAATCACAAAGACAAGAACCTTCGTCAGAGGAACACAAACTGAGCACACTGATAATAACATATTATACATGTATGTATCGACCATATGAAAGTAACCAGGAAAAGGGATTTATAGAAATGTGTTAATAAGAATTTATCTGCCAATAAAACGAcgtagaagaagaagaggaggaggaaggagctaCTGTACATGTCTGTATTGATTGATTATTGATGAGGCATGCCTTCTGATTTTGATTATCTAGCTATCGGGTGAAGAATGTGATCAATGAACGTGATCCCATAGCATTATGAATGACTTATGAAGTGTCTATGGAAGCATTATAACCATTGTTTGCTGCATGCAGTTATTGATTGTCGCTGTTTATTGATCgttttgatttgattatttagTCTGATCAAATTCTTATCATTTTTCCGATTTTTACTCAATTCTGAAGTAATGCATGCAAGGTATTCTAACTTTCTGTTTGGTCCCGGACCTGACATGGCTTTtttgactgtgtcccaaatgacactctttttccctatatagtccCCCGCCCCCCAAacgtctctggtcaaaagtactgcactctATAGGGCAGGAGTATTCAAATCTTATCATACAAGCTTATCATACAAGCATACAAGAACTGATGTTTTTTTTCGGTTTTTCTACCTGTTAATGCATTTGACCTACCTGGTGTTccaggtctaaaccaggcccCCCGGATCAAAGAAAAAGGAGTGGAAATGGTTTCAAAGTCCAGATTTGAATGTGAATGGAATgatatggaatagggtgtcacttgGGACACAGGCTTGTTTTTTTGTTTACTCAGATAATAGATAATCACTATTTGTGTTGATTATGAGAAGCTAAAGACTTCGGCACCAATTATAATCTGGTATGACAGTAGATCTGTACAGTTTATCATTCTGCCGCATACCATTTTATAAATCGGTTACTTATTCATTCATATTTTATCAGATCACATCTGGTTTCGCGTTTTAGTAAGGGCTTTGCAATGTCCCTGTCTTTTTGAATTTGATTGAAAATTCCTATATTTaacatgtactgtattgtatgtatCCAACCACCTTATGTAACAATACATGTAGAGTAATATGAAGGATATTCATTCATGAGATGCACTTACATTTTGCAAAAATAATGGAAATAAAAAAAGATCTCTATATAAAGTTAATTTAGTATGTAATTGTAACAACTCCTCCTAATCATTCTAACTGCTGTGTTTAACTGAAATTAAAgtgtgtattgtgtatagatAGCATGGCTATTATCCTATGCAATAATAATCAATATTGATATTAATATATACAAATCCCTCTTAGCAGCTTTTAGATTCTCTATGTTGATCTAGAATGATCTTTAGAGCATTGATAGATAGCGTACCGGACAGCTTGTTGATCTTTATAGTTGataatgttatacagtatatcTAGAAGTTGGAGCTAGGTAGGAGGCAGTGCGACAACAGGAACTATGTCATGTATGTCAAGATTGATTGACACTTGTGATTGATTTTGGGATTGCTTTACAAGTCATTTTTAATAATAAAAACTTTAAAAATAAA

Function

NR:

description
neuroplastin-like

GO: NA

KEGG:

id description
K22653 NPTN; neuroplastin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960449.1 False 2704 mRNA 0.43 8 98692756 98723102
XM_036960450.1 True 2692 mRNA 0.43 8 98692756 98723102

Neighbor

gene id symbol gene type direction distance location
LOC110502529 LOC106584711 coding downstream 3620 98642990 ~ 98689136 (-)
LOC110500748 LOC106561725 coding downstream 91506 98587916 ~ 98601250 (-)
edc3 LOC106561715 coding downstream 157066 98521998 ~ 98535690 (-)
LOC110500720 LOC106561717 coding downstream 178895 98474734 ~ 98513861 (-)
lmo2 rbtn2 coding downstream 266098 98424015 ~ 98426658 (-)
LOC110500636 NA coding upstream 72747 98795849 ~ 98808194 (-)
LOC110500630 NA coding upstream 79903 98803005 ~ 98808340 (-)
LOC110502520 LOC105018371 coding upstream 96679 98819781 ~ 98832865 (-)
LOC110500681 scamp5 coding upstream 119335 98842437 ~ 98854773 (-)
LOC118943884 LOC106561728 coding upstream 152972 98876074 ~ 98892143 (-)
G210638 NA non-coding downstream 14060 98673386 ~ 98678696 (-)
G210632 NA non-coding downstream 38266 98653561 ~ 98654490 (-)
G210623 NA non-coding downstream 51041 98639694 ~ 98641715 (-)
G210628 NA non-coding downstream 54210 98638209 ~ 98638546 (-)
G210695 NA non-coding upstream 19376 98742478 ~ 98749276 (-)
G210694 NA non-coding upstream 21965 98745067 ~ 98754802 (-)
G210693 NA non-coding upstream 42302 98765404 ~ 98767695 (-)
G210665 NA non-coding upstream 61226 98784328 ~ 98785563 (-)
G210706 NA non-coding upstream 62509 98785611 ~ 98786460 (-)
LOC118936884 NA other downstream 547239 98127948 ~ 98145517 (-)
G209841 NA other downstream 1073544 97618859 ~ 97619212 (-)
G209802 NA other downstream 1190362 97501172 ~ 97502394 (-)
G209560 NA other downstream 1275568 97416821 ~ 97417188 (-)
G208658 NA other downstream 2270532 96421866 ~ 96422224 (-)
LOC118943885 LOC106561728 other upstream 195346 98914015 ~ 98946069 (-)
LOC118943882 LOC106561728 other upstream 219372 98936783 ~ 98944041 (-)
G210765 NA other upstream 302630 99025732 ~ 99026118 (-)
G211127 NA other upstream 400131 99123233 ~ 99123658 (-)
LOC118936886 NA other upstream 892574 99615676 ~ 99619142 (-)

Expression


Co-expression Network