G104183


Basic Information

Item Value
gene id G104183
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 911793 ~ 912016 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU117004
ctgtatatagcagtATGTAGCAGGATAATGTACTGAAAATAGCATTATCGTAcaggataatgtactgtatatagcacgataatgtactgtatatagcagtATGGTGCATGATAATGTACTGTGTATATAACAGTATGGTCcaggataatgtactgtatatagcagtATGGAGCAggatagtgtactgtatataacagGATAAAGTACTGTATATAGCAGTATGG

Function

NR:

description
heparan sulfate glucosamine 3-O-sulfotransferase 3B1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117004 True 224 lncRNA 0.57 1 911793 912016

Neighbor

gene id symbol gene type direction distance location
LOC110506977 LOC106595099 coding upstream 3217 905576 ~ 908576 (+)
cmc1 cc068 coding upstream 39279 860459 ~ 872515 (+)
LOC118937316 LOC106573240 coding upstream 185818 724791 ~ 731551 (+)
zgc:110410 LOC106594189 coding upstream 189400 714730 ~ 722393 (+)
LOC110512917 csmd3 coding upstream 239599 149182 ~ 672194 (+)
LOC118936923 NA coding downstream 56600 968616 ~ 969528 (+)
rbms3 rbms3 coding downstream 111445 1023461 ~ 1231535 (+)
LOC110515032 LOC106606177 coding downstream 310114 1222130 ~ 1224904 (+)
tgfbr2b LOC106606173 coding downstream 397186 1309202 ~ 1390936 (+)
LOC118937323 NA coding downstream 512300 1424316 ~ 1426453 (+)
G104181 NA non-coding upstream 174 909058 ~ 911619 (+)
G104179 NA non-coding upstream 14387 886962 ~ 897406 (+)
G104138 NA non-coding upstream 33129 878059 ~ 878664 (+)
G104128 NA non-coding upstream 132063 778189 ~ 779730 (+)
G104116 NA non-coding upstream 154022 756786 ~ 757771 (+)
G104184 NA non-coding downstream 577 912593 ~ 912844 (+)
G104185 NA non-coding downstream 2167 914183 ~ 914388 (+)
G104186 NA non-coding downstream 2722 914738 ~ 915183 (+)
G104187 NA non-coding downstream 4664 916680 ~ 917640 (+)
G104192 NA non-coding downstream 14021 926037 ~ 926363 (+)
G104092 NA other upstream 210522 690046 ~ 701271 (+)
G103851 NA other upstream 730771 174996 ~ 181022 (+)
G104761 NA other downstream 241045 1153061 ~ 1153749 (+)
G105036 NA other downstream 787057 1699073 ~ 1700431 (+)
G105042 NA other downstream 796953 1708969 ~ 1710557 (+)
G106019 NA other downstream 1608700 2520716 ~ 2527972 (+)

Expression


Co-expression Network