G105837


Basic Information

Item Value
gene id G105837
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2381345 ~ 2382047 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU119477
cgttgatctggtacttcctgtgtttagctccattcTCCTGCATGTTATATTTATTCCTCTGGTGTTAATTGCATTGTTtttaaattacaaaaaatgtCAACTCCGGCATCTTTAGGAAAGGTTTGTAAATCAAGCATTTCACTATCAAGACGACACCGGTTGAATTCGGCACATTTGAtaagtaacatttgatttgattaacagaCAACAGTATTATATGGAACCAATCTCACTGCTTGACAGTACATGGATATTTCAACTATCCTGTAGTCATGGAAACACAAACTATATCCCGTAGTCAAGGAAACACAAACTATATCCTGTAGCATGGAAACACAAACTATATCCTGTAGTCATGGAAACACAAACTATGTCCTGTAGTCATGGAAACACAAACTATATCCTGTAGTAATGGAAACACAAACTATATCCTGTAGTTATGGAAATACAAACTATATTATGTAGTCATGGAAACACAAACTATATCATGCAGTATGGAAACACAAACTGTATCATGTAGTCATGGAAACACAAACTATATCCTGTAGTCATGGAAACACAAACTATATCCTGTAGTCATGGAAACACAAACTGTATCATGTAGTATGGAAACACAAACTATATCCTGTAGTCATGGAAACACAAACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119477 True 648 lncRNA 0.44 2 2381345 2382047

Neighbor

gene id symbol gene type direction distance location
LOC118944029 NA coding upstream 203349 2166121 ~ 2177996 (+)
LOC110516539 NA coding upstream 260890 2116553 ~ 2120455 (+)
LOC110511503 LOC106605726 coding upstream 479897 1865365 ~ 1901456 (+)
slc6a3 slc6a3 coding upstream 527775 1816808 ~ 1853570 (+)
LOC110514512 LOC105016610 coding upstream 586407 1745298 ~ 1794938 (+)
LOC118944030 NA coding downstream 36139 2418186 ~ 2420621 (+)
LOC118937340 NA coding downstream 596189 2978236 ~ 2978524 (+)
LOC118937337 NA coding downstream 596739 2978786 ~ 2980193 (+)
mboat1 LOC106573215 coding downstream 1025140 3350582 ~ 3487129 (+)
colec10 LOC106591867 coding downstream 1668736 4050783 ~ 4065607 (+)
G105824 NA non-coding upstream 15838 2364793 ~ 2365507 (+)
G105822 NA non-coding upstream 17682 2362856 ~ 2363663 (+)
G105806 NA non-coding upstream 44839 2336048 ~ 2336506 (+)
G105804 NA non-coding upstream 47004 2333824 ~ 2334341 (+)
G105803 NA non-coding upstream 48170 2331403 ~ 2333175 (+)
G105839 NA non-coding downstream 2944 2384991 ~ 2385370 (+)
G105847 NA non-coding downstream 11435 2393482 ~ 2395688 (+)
G105853 NA non-coding downstream 27470 2409517 ~ 2410453 (+)
G105871 NA non-coding downstream 64045 2446092 ~ 2446640 (+)
G105878 NA non-coding downstream 71113 2453160 ~ 2453377 (+)
G105042 NA other upstream 670788 1708969 ~ 1710557 (+)
G105036 NA other upstream 680914 1699073 ~ 1700431 (+)
tgfbr2b LOC106606173 other upstream 1028482 1309202 ~ 1390936 (+)
G104761 NA other upstream 1227596 1153061 ~ 1153749 (+)
cmc1 cc068 other upstream 1508830 860459 ~ 872515 (+)
G106019 NA other downstream 138669 2520716 ~ 2527972 (+)
G106122 NA other downstream 335914 2717961 ~ 2718525 (+)
G106240 NA other downstream 592776 2974823 ~ 3039475 (+)
G106253 cdkal other downstream 824750 3006312 ~ 3391033 (+)

Expression


Co-expression Network