G105888


Basic Information

Item Value
gene id G105888
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2465164 ~ 2466571 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU119544
GTTATAGACTAGTGTgcaggtgttatagactagagtaggtgttatagactagagaAGGTGTTATAGACCAGAGACcaggtgttatagactagagTAGGTGTTATAGACTGGAGAGTaggtgttatagactagagaGTAGGTGTTATAGGCTAGAAACcaggtgttatagactagagtaggtgttatagactagagaGTAGGTGTTATAGGCTAGAGACCAGGTGTTATAGACTAGGGTAGGTGTTATAGACTGGAGAATAGGTGTTATGGACTAGAGAGCAGGTGTTATATACTAGAGTaggtgttatagactagagaCCAGGTGTTATAGACTAGTGAGCGAGTGTTATAGACTAGTGAGAAGGtgttatagactatagaccagctCTTATAGACAAGACCAGGTATTATAGTCTAGACCAGGTGTTTTTGACAAGAGTATgtgttatagactagagcaggtgttatagactatatcaggtgttatagactatatcaggtgttatagactagagtaggtgttatagactagagcaggtgtTAGAGACTAGATAGCAAGTGTTATAGACTAGACCAGGTGTTATAGACCAGAGagcaggtgttatagactagagtaggtgttatagactagagcaggtgttatagaccagagagcaggtgttatagactagtgagcaggtgttatagactatatcaggtgttatagactagagcaggtgtTATAGACTATATCAGGTGTTATAGACTATATCAGgtgttatagactagagagcaggtgttatagactagaTCAGGTGCTGTAGACTAGAGACcaggtgttatagactagagagcaggtgttatagactagagTAGGTGTTATAGACTAGTGAGCAGGTGTTATAGACTATTTAAGGTGTTATAGACTAGAGTATGTGTTATAGACTAGAGTAGGTGTTATAGACTGGAGAGCAGGTGTCATAGACTAGTGAGCAGGTGTTATAGACT
>TU119545
GTTATAGACTAGTGTgcaggtgttatagactagagtaggtgttatagactagagaAGGTGTTATAGACCAGAGACcaggtgttatagactagagTAGGTGTTATAGACTGGAGAGTaggtgttatagactagagaGTAGGTGTTATAGGCTAGAAACcaggtgttatagactagagtaggtgttatagactagagaGTAGGTGTTATAGGCTAGAGACCAGGTGTTATAGACTAGGGTAGGTGTTATAGACTGGAGAATAGGTGTTATGGACTAGAGAGCAGGTGTTATATACTAGAGTaggtgttatagactagagaCCAGGTGTTATAGACTAGTGAGCGAGTGTTATAGACTAGTGAGAAGGtgttatagactatagaccagctCTTATAGACAAGACCAGGTATTATAGTCTAGACCAGGTGTTTTTGACAAGAGTATgtgttatagactagagcaggtgttatagactatatcaggtgttatagactatatcaggtgttatagactagagtaggtgttatagactagagcaggtgtTAGAGACTAGATAGCAAGTGTTATAGACTAGACCAGGTGTTATAGACCAGAGagcaggtgttatagactagagtaggtgttatagactagagcaggtgttatagaccagagagcaggtgttatagactagtgagcaggtgttatagactatatcaggtgttatagactagagcaggtgtTATAGACTATATCAGGTGTTATAGACTATATCAGGTGTTACAGACTAGagcaggtgttatagactagaccaggtgttatagactagtgaccaggtgttatagactagagagcaggtgttatagactagagtaggtgttatagactagtgaccaggtgttatagactagagagcaggtgttatagactagagagcaggtgttatagact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119544 False 987 lncRNA 0.40 3 2465164 2466571
TU119545 True 928 lncRNA 0.40 2 2465164 2466289

Neighbor

gene id symbol gene type direction distance location
LOC118944030 NA coding upstream 44543 2418186 ~ 2420621 (+)
LOC118944029 NA coding upstream 287168 2166121 ~ 2177996 (+)
LOC110516539 NA coding upstream 344709 2116553 ~ 2120455 (+)
LOC110511503 LOC106605726 coding upstream 563716 1865365 ~ 1901456 (+)
slc6a3 slc6a3 coding upstream 611594 1816808 ~ 1853570 (+)
LOC118937340 NA coding downstream 511665 2978236 ~ 2978524 (+)
LOC118937337 NA coding downstream 512215 2978786 ~ 2980193 (+)
mboat1 LOC106573215 coding downstream 940616 3350582 ~ 3487129 (+)
colec10 LOC106591867 coding downstream 1584212 4050783 ~ 4065607 (+)
mal2 mal2 coding downstream 1599421 4065992 ~ 4085680 (+)
G105887 NA non-coding upstream 466 2464444 ~ 2464698 (+)
G105883 NA non-coding upstream 5837 2459062 ~ 2459327 (+)
G105882 NA non-coding upstream 6246 2458602 ~ 2458918 (+)
G105880 NA non-coding upstream 8970 2455762 ~ 2456194 (+)
G105878 NA non-coding upstream 11787 2453160 ~ 2453377 (+)
G105889 NA non-coding downstream 252 2466823 ~ 2468498 (+)
G106002 NA non-coding downstream 18226 2484797 ~ 2485146 (+)
G106004 NA non-coding downstream 18626 2485197 ~ 2485617 (+)
G106006 NA non-coding downstream 19657 2486228 ~ 2486430 (+)
G106015 NA non-coding downstream 48353 2514924 ~ 2536882 (+)
G105042 NA other upstream 754607 1708969 ~ 1710557 (+)
G105036 NA other upstream 764733 1699073 ~ 1700431 (+)
tgfbr2b LOC106606173 other upstream 1112301 1309202 ~ 1390936 (+)
G104761 NA other upstream 1311415 1153061 ~ 1153749 (+)
cmc1 cc068 other upstream 1592649 860459 ~ 872515 (+)
G106019 NA other downstream 54145 2520716 ~ 2527972 (+)
G106122 NA other downstream 251390 2717961 ~ 2718525 (+)
G106240 NA other downstream 508252 2974823 ~ 3039475 (+)
G106253 cdkal other downstream 740226 3006312 ~ 3391033 (+)

Expression


Co-expression Network