G106080


Basic Information

Item Value
gene id G106080
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2632915 ~ 2633762 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU119805
acaccacagtattcagcactaaaacactaaaacaccacagtattcagcactaaaacactaaaacaccacagtattcagcactaaaacaccacagtattcagcactaaaacaccacagtattcagcactaaaacaccacagtattcagcactaaaacactaaaacaccacagtattcagcactaaaacactaaaacaccacagtattcaccactaaaacactaaaacaccacagtattcaacactaaaacaccacagtattcagcactaaaacaccacagtattcaacactaaaacaccacagtattcaacactaaaacaccacagtattca
>TU119807
acaccacagtattcagcactaaaacactaaaacaccacagtattcagcactaaaacactaaaacaccacagtattcagcactaaaacaccacagtattcagcactaaaacaccacagtattcagcactaaaacaccacagtattcagcactaaaacaccACAGTATTCAGCACTAAAACACCACAGTATTCAGCACTAAAACACCACAGTATTCAGCACTAAAACACCACAGTATTCAACAATAAAACACCAcagtattcaccactaaaacatcaCAGTATTCAGCACTAAAACACCAcagtattcaccactaaaacGCCACAGTATTCAGCACTAAAACACCACAGTATTCAGCACTAAAACACCACAGTATTCAGCACTAAAACACCAcagtattcaccactaaaacactaaaacaccaCAGTATTCAGCACTAAAACACTCCACACCACAGTATTCAGCACTAAAACACCACAGTATTCAGCACTAAAACACCACAGTATTCAGCACTAAAAC

Function

NR:

description
PREDICTED: pre-mRNA-splicing factor RBM22

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119805 False 331 lncRNA 0.37 2 2632915 2633276
TU119807 True 516 lncRNA 0.38 2 2632915 2633762

Neighbor

gene id symbol gene type direction distance location
LOC118944030 NA coding upstream 212294 2418186 ~ 2420621 (+)
LOC118944029 NA coding upstream 454919 2166121 ~ 2177996 (+)
LOC110516539 NA coding upstream 512460 2116553 ~ 2120455 (+)
LOC110511503 LOC106605726 coding upstream 731467 1865365 ~ 1901456 (+)
slc6a3 slc6a3 coding upstream 779345 1816808 ~ 1853570 (+)
LOC118937340 NA coding downstream 344474 2978236 ~ 2978524 (+)
LOC118937337 NA coding downstream 345024 2978786 ~ 2980193 (+)
mboat1 LOC106573215 coding downstream 773425 3350582 ~ 3487129 (+)
colec10 LOC106591867 coding downstream 1417021 4050783 ~ 4065607 (+)
mal2 mal2 coding downstream 1432230 4065992 ~ 4085680 (+)
G106070 NA non-coding upstream 41918 2590319 ~ 2590997 (+)
G106069 NA non-coding upstream 44017 2587572 ~ 2588898 (+)
G106068 NA non-coding upstream 50130 2582471 ~ 2582785 (+)
G106065 NA non-coding upstream 53111 2579009 ~ 2579804 (+)
G106056 NA non-coding upstream 64649 2568062 ~ 2568266 (+)
G106057 NA non-coding downstream 11140 2644902 ~ 2646178 (+)
G106107 NA non-coding downstream 48171 2681933 ~ 2682287 (+)
G106120 NA non-coding downstream 81290 2715052 ~ 2715404 (+)
G106124 NA non-coding downstream 87291 2721053 ~ 2722361 (+)
G106143 NA non-coding downstream 122246 2756008 ~ 2756799 (+)
G106019 NA other upstream 104943 2520716 ~ 2527972 (+)
G105042 NA other upstream 922358 1708969 ~ 1710557 (+)
G105036 NA other upstream 932484 1699073 ~ 1700431 (+)
tgfbr2b LOC106606173 other upstream 1280052 1309202 ~ 1390936 (+)
G104761 NA other upstream 1479166 1153061 ~ 1153749 (+)
G106122 NA other downstream 84199 2717961 ~ 2718525 (+)
G106240 NA other downstream 341061 2974823 ~ 3039475 (+)
G106253 cdkal other downstream 573035 3006312 ~ 3391033 (+)
G106575 NA other downstream 1005672 3639434 ~ 3800352 (+)

Expression


Co-expression Network