G106855


Basic Information

Item Value
gene id G106855
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4222458 ~ 4223131 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU120997
TTTCTTTGGAAGTTGATGTTGTTGATGCAGACAACCTGGTGAGTCAATTTAAAAGGCCGCGGGCTCTCAAATCCCTTGTCCTTCTTCCTGTTCATCTTGACTTCATGCATTGATACGGTATATGAATTTGATCATGTTCGTGAACTACGGGTTTGACGCGATGGTCGTGTGGACTGGAAAGTTCTTCCTGTATccacaaaaaaacatatatatatttccagTCCTAATAAATCCCAATGCAATGAGTTCATGCGCAGCGAATGTGGCgatttagctagctagtcagtcagttgactagtgctaacgttagccagttagccagTTAACACAACACTTCCAGCCATTCTTCCCCGCCGGCTGTCTGTGCAATGCAATCAGCGTCTCAAACACCTTTTCCAGATATGCACGCTACCAAAGACTATCATTCAGCTTTGCAAGAATAATTTATGTTTCAAATGAGCATTTTTGTCAATGTTGAGCTCCAAAAACATGAAACTATATCCTCTCCGTCTGAGCGACAGCTCAAAGTT

Function

NR:

description
PREDICTED: transcription initiation factor TFIID subunit 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120997 True 530 lncRNA 0.55 2 4222458 4223131

Neighbor

gene id symbol gene type direction distance location
LOC110507036 LOC106594376 coding upstream 102716 4113122 ~ 4119742 (+)
mal2 mal2 coding upstream 136778 4065992 ~ 4085680 (+)
colec10 LOC106591867 coding upstream 156851 4050783 ~ 4065607 (+)
mboat1 LOC106573215 coding upstream 800359 3350582 ~ 3487129 (+)
LOC118937337 NA coding upstream 1242265 2978786 ~ 2980193 (+)
deptor deptor coding downstream 13749 4236880 ~ 4302536 (+)
col14a1a col14a1 coding downstream 104852 4327983 ~ 4572381 (+)
LOC110520696 mtbp coding downstream 379827 4602958 ~ 4654733 (+)
LOC118937359 NA coding downstream 411372 4634503 ~ 4636138 (+)
LOC118937361 NA coding downstream 512526 4735246 ~ 4737284 (+)
G106852 NA non-coding upstream 211 4221534 ~ 4222247 (+)
G106851 NA non-coding upstream 2095 4219706 ~ 4220363 (+)
G106849 NA non-coding upstream 3567 4218375 ~ 4218891 (+)
G106842 NA non-coding upstream 15924 4206035 ~ 4206534 (+)
G106841 NA non-coding upstream 16446 4205440 ~ 4206012 (+)
G106857 NA non-coding downstream 985 4224116 ~ 4224594 (+)
G106859 NA non-coding downstream 3133 4226264 ~ 4226569 (+)
G106860 dscc1 non-coding downstream 4155 4227286 ~ 4232470 (+)
G106864 NA non-coding downstream 23608 4246739 ~ 4247242 (+)
G106868 NA non-coding downstream 29786 4252917 ~ 4253177 (+)
G106814 NA other upstream 83962 4137813 ~ 4138496 (+)
G106775 NA other upstream 194864 4027075 ~ 4027594 (+)
G106575 NA other upstream 422106 3639434 ~ 3800352 (+)
G106595 NA other upstream 544608 3676265 ~ 3677850 (+)
G107922 NA other downstream 521037 4744168 ~ 4745586 (+)
G107955 LOC106592862 other downstream 585608 4808739 ~ 4811575 (+)
G108048 NA other downstream 634780 4857911 ~ 4858274 (+)
G108280 NA other downstream 913225 5136356 ~ 5136992 (+)
G108354 LOC106573122 other downstream 1073048 5296179 ~ 5299933 (+)

Expression


Co-expression Network