Gene
RNA
| Item | Value |
|---|---|
| gene id | G106860 |
| gene name | dscc1 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 4227286 ~ 4232470 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| dscc1 | Predicted to enable DNA binding activity. Predicted to be involved in maintenance of mitotic sister chromatid cohesion and regulation of DNA replication. Predicted to act upstream of or within DNA replication and mitotic sister chromatid cohesion. Predicted to be part of Ctf18 RFC-like complex. Predicted to be active in chromatin; chromosome, centromeric region; and nucleus. Is expressed in several structures, including alar plate midbrain region; central nervous system; eye; immature eye; and pectoral fin bud. Orthologous to human DSCC1 (DNA replication and sister chromatid cohesion 1). |
| description |
|---|
| sister chromatid cohesion protein DCC1-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU121002 | True | 1080 | lncRNA | 0.47 | 4 | 4227286 | 4232470 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110507036 | LOC106594376 | coding | upstream | 107544 | 4113122 ~ 4119742 (+) |
| mal2 | mal2 | coding | upstream | 141606 | 4065992 ~ 4085680 (+) |
| colec10 | LOC106591867 | coding | upstream | 161679 | 4050783 ~ 4065607 (+) |
| mboat1 | LOC106573215 | coding | upstream | 805187 | 3350582 ~ 3487129 (+) |
| LOC118937337 | NA | coding | upstream | 1247093 | 2978786 ~ 2980193 (+) |
| deptor | deptor | coding | downstream | 4410 | 4236880 ~ 4302536 (+) |
| col14a1a | col14a1 | coding | downstream | 95513 | 4327983 ~ 4572381 (+) |
| LOC110520696 | mtbp | coding | downstream | 370488 | 4602958 ~ 4654733 (+) |
| LOC118937359 | NA | coding | downstream | 402033 | 4634503 ~ 4636138 (+) |
| LOC118937361 | NA | coding | downstream | 503187 | 4735246 ~ 4737284 (+) |
| G106859 | NA | non-coding | upstream | 717 | 4226264 ~ 4226569 (+) |
| G106857 | NA | non-coding | upstream | 2692 | 4224116 ~ 4224594 (+) |
| G106855 | NA | non-coding | upstream | 4155 | 4222458 ~ 4223131 (+) |
| G106852 | NA | non-coding | upstream | 5039 | 4221534 ~ 4222247 (+) |
| G106851 | NA | non-coding | upstream | 6923 | 4219706 ~ 4220363 (+) |
| G106864 | NA | non-coding | downstream | 14269 | 4246739 ~ 4247242 (+) |
| G106868 | NA | non-coding | downstream | 20447 | 4252917 ~ 4253177 (+) |
| G106869 | NA | non-coding | downstream | 21632 | 4254102 ~ 4254936 (+) |
| G107580 | NA | non-coding | downstream | 72842 | 4305312 ~ 4305573 (+) |
| G106814 | NA | other | upstream | 88790 | 4137813 ~ 4138496 (+) |
| G106775 | NA | other | upstream | 199692 | 4027075 ~ 4027594 (+) |
| G106575 | NA | other | upstream | 426934 | 3639434 ~ 3800352 (+) |
| G106595 | NA | other | upstream | 549436 | 3676265 ~ 3677850 (+) |
| G107922 | NA | other | downstream | 511698 | 4744168 ~ 4745586 (+) |
| G107955 | LOC106592862 | other | downstream | 576269 | 4808739 ~ 4811575 (+) |
| G108048 | NA | other | downstream | 625441 | 4857911 ~ 4858274 (+) |
| G108280 | NA | other | downstream | 903886 | 5136356 ~ 5136992 (+) |
| G108354 | LOC106573122 | other | downstream | 1063709 | 5296179 ~ 5299933 (+) |
