G107958


Basic Information

Item Value
gene id G107958
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4819733 ~ 4820296 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU122677
GCACCACTCCATCGTCAATATGTCTTATCAGACATAACAGGACTGCTAAGAGGAATGCTTAAAGGGACAGTTCAACGTCATAGCCATCCTCTCCAGCACCACTCCAACGTCAACATATCTTATCAGACATAACAGGACTGCTAAGAGGAATGCTTAAAGGGACAGTTCAACATCATAGCCATCCTCTCCCGCACCACTCCATCATCAACATATTTGAAAATGGCACGTTTCTATGTTTagtagcacttgttggctgaagCTAGTCGTACCAAACGAGTGTGCTagcatactcccttaaaaagaCCTTCACTTTAAAAATGATAAAAGagcggcaatagtactgtttgtccattttgaggcgccgtagccagtat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122677 True 374 lncRNA 0.43 2 4819733 4820296

Neighbor

gene id symbol gene type direction distance location
LOC118937361 NA coding upstream 82449 4735246 ~ 4737284 (+)
LOC110520696 mtbp coding upstream 165000 4602958 ~ 4654733 (+)
LOC118937359 NA coding upstream 183595 4634503 ~ 4636138 (+)
col14a1a col14a1 coding upstream 247352 4327983 ~ 4572381 (+)
deptor deptor coding upstream 517197 4236880 ~ 4302536 (+)
LOC110506140 LOC106606110 coding downstream 327805 5148101 ~ 5176987 (+)
tbc1d31 tbc1d31 coding downstream 375635 5195931 ~ 5227041 (+)
LOC110520809 LOC106598492 coding downstream 407761 5228057 ~ 5235894 (+)
mrpl32 LOC106595598 coding downstream 453860 5274156 ~ 5275584 (+)
LOC118937366 NA coding downstream 463398 5283628 ~ 5285741 (+)
G107942 NA non-coding upstream 34189 4784631 ~ 4785544 (+)
G107932 NA non-coding upstream 55261 4763291 ~ 4764472 (+)
G107917 NA non-coding upstream 85885 4731957 ~ 4733848 (+)
G107912 NA non-coding upstream 97443 4711544 ~ 4722290 (+)
G107965 NA non-coding downstream 17087 4837383 ~ 4837938 (+)
G107967 NA non-coding downstream 19108 4839404 ~ 4840100 (+)
G108031 NA non-coding downstream 21776 4842072 ~ 4842349 (+)
G108042 NA non-coding downstream 29451 4849747 ~ 4849961 (+)
G108070 NA non-coding downstream 67572 4887868 ~ 4888093 (+)
G107955 LOC106592862 other upstream 8158 4808739 ~ 4811575 (+)
G107922 NA other upstream 74147 4744168 ~ 4745586 (+)
G106814 NA other upstream 681237 4137813 ~ 4138496 (+)
G106775 NA other upstream 792139 4027075 ~ 4027594 (+)
G106575 NA other upstream 1019381 3639434 ~ 3800352 (+)
G108048 NA other downstream 37615 4857911 ~ 4858274 (+)
G108280 NA other downstream 316060 5136356 ~ 5136992 (+)
G108354 LOC106573122 other downstream 475883 5296179 ~ 5299933 (+)
ptp4a3b LOC106596188 other downstream 686250 5480975 ~ 5542867 (+)
LOC110506279 LOC106595015 other downstream 760997 5575366 ~ 5592253 (+)

Expression


Co-expression Network