G108139


Basic Information

Item Value
gene id G108139
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4955448 ~ 4955782 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU122891
caatactacaatcatacgaccggtgtggaggaagagaggtggccctggaccgactgaacaccgtgcgcagatcgtgatattcctccggcacccctgtcaaatcaccaggctcctcctgtgaagaagagacagaggaaacaggagggatagcagacattaaacatttcacatgacaagagacgttccaggagaggatggaattactagaccaattaatggaaggattatgacaaactagccagggatggcccaaaacaacaggtgtaaaaggtgaacgaaaaattaaaaaagaaatggtttcgctatgattaccagaaacagtgagggttaaaggt

Function

NR:

description
PREDICTED: retrotransposon-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122891 True 335 lncRNA 0.46 1 4955448 4955782

Neighbor

gene id symbol gene type direction distance location
LOC118937361 NA coding upstream 218164 4735246 ~ 4737284 (+)
LOC110520696 mtbp coding upstream 300715 4602958 ~ 4654733 (+)
LOC118937359 NA coding upstream 319310 4634503 ~ 4636138 (+)
col14a1a col14a1 coding upstream 383067 4327983 ~ 4572381 (+)
deptor deptor coding upstream 652912 4236880 ~ 4302536 (+)
LOC110506140 LOC106606110 coding downstream 192319 5148101 ~ 5176987 (+)
tbc1d31 tbc1d31 coding downstream 240149 5195931 ~ 5227041 (+)
LOC110520809 LOC106598492 coding downstream 272275 5228057 ~ 5235894 (+)
mrpl32 LOC106595598 coding downstream 318374 5274156 ~ 5275584 (+)
LOC118937366 NA coding downstream 327912 5283628 ~ 5285741 (+)
G108136 NA non-coding upstream 3062 4951759 ~ 4952386 (+)
G108084 NA non-coding upstream 42095 4913054 ~ 4913353 (+)
G108071 NA non-coding upstream 67148 4888096 ~ 4888300 (+)
G108070 NA non-coding upstream 67355 4887868 ~ 4888093 (+)
G108042 NA non-coding upstream 105487 4849747 ~ 4849961 (+)
G108149 NA non-coding downstream 8088 4963870 ~ 4964105 (+)
G108170 NA non-coding downstream 28985 4984767 ~ 4984975 (+)
G108189 NA non-coding downstream 48074 5003856 ~ 5004116 (+)
G108190 NA non-coding downstream 48795 5004577 ~ 5004821 (+)
G108192 NA non-coding downstream 49488 5005270 ~ 5005557 (+)
G108048 NA other upstream 97174 4857911 ~ 4858274 (+)
G107955 LOC106592862 other upstream 143873 4808739 ~ 4811575 (+)
G107922 NA other upstream 209862 4744168 ~ 4745586 (+)
G106814 NA other upstream 816952 4137813 ~ 4138496 (+)
G106775 NA other upstream 927854 4027075 ~ 4027594 (+)
G108280 NA other downstream 180574 5136356 ~ 5136992 (+)
G108354 LOC106573122 other downstream 340397 5296179 ~ 5299933 (+)
ptp4a3b LOC106596188 other downstream 550764 5480975 ~ 5542867 (+)
LOC110506279 LOC106595015 other downstream 625511 5575366 ~ 5592253 (+)
G108682 NA other downstream 764183 5719965 ~ 5725579 (+)

Expression


Co-expression Network