G108233


Basic Information

Item Value
gene id G108233
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5053050 ~ 5054017 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU122993
GAGGGAGCTGCCTgcttgctgttgctgttgctgttgtttcAATGTAAAGTCTCCATCACACCGACAGCTTcatttgcattttggtacaccagaactacattcatttccaatgaaaaGCTGGGTTTGTCCTGCAGCATTGCGTTGccgaggcagttgcagtgcgttctgcGTGATGCACACGTTGGATTTATAGAACTTAATCAAACTTATGCATCAAACTGTATGTGTAGTCGGCTGGACAGAAACGGTAGCAgaaaggtgaatgttgaacttttgttacccacatatccagatgatgctgcataACATTTTGCgcaatgacgctgtcggtgtgaCCGAGGCATAGGGAGGTTTAATACCAATATTCTGAGGTAGAACACATGCTGCTTTGATCCTAGAGGTTTAACACCAATACCCTGAGGTAGAACACATGTTGCTTGAGGTTTTATACCAATACTCTGAGGTAGAACACATGTTGCTTGAGGTTTAATACCAATACTCTGAGGTAGAACACATGTTGCTTGAGGTTTAATACCAATACCCTGAGGTAGAACACATGCTGCTTGAGGTTTAATACCAATACCCTGCGGTAGAACACATGCTGCTTGAGGTTTAATACCAATACCCTGAGGTAGAACACATGCTGCTTTGATCCACTCCGCGTCACGACCCACTGGCTttcacactattccctatgtagtgcactacttttgaacagggtgctgtataggaaatagggtgccatttgggactcactaTGGTGACTGAGGAAGAGAAGTCGAACACATGGTGACTGAGGAAGAGAAGTCGAACACATGGTGACTGAGGAAGAGAAGTCGAAC

Function

NR:

description
PREDICTED: titin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122993 True 842 lncRNA 0.45 3 5053050 5054017

Neighbor

gene id symbol gene type direction distance location
LOC118937361 NA coding upstream 315766 4735246 ~ 4737284 (+)
LOC110520696 mtbp coding upstream 398317 4602958 ~ 4654733 (+)
LOC118937359 NA coding upstream 416912 4634503 ~ 4636138 (+)
col14a1a col14a1 coding upstream 480669 4327983 ~ 4572381 (+)
deptor deptor coding upstream 750514 4236880 ~ 4302536 (+)
LOC110506140 LOC106606110 coding downstream 94084 5148101 ~ 5176987 (+)
tbc1d31 tbc1d31 coding downstream 141914 5195931 ~ 5227041 (+)
LOC110520809 LOC106598492 coding downstream 174040 5228057 ~ 5235894 (+)
mrpl32 LOC106595598 coding downstream 220139 5274156 ~ 5275584 (+)
LOC118937366 NA coding downstream 229677 5283628 ~ 5285741 (+)
G108221 NA non-coding upstream 16784 5036024 ~ 5036266 (+)
G108217 NA non-coding upstream 25638 5027180 ~ 5027412 (+)
G108214 NA non-coding upstream 28100 5024708 ~ 5024950 (+)
G108198 NA non-coding upstream 41390 5010933 ~ 5011660 (+)
G108193 NA non-coding upstream 45452 5007206 ~ 5007598 (+)
G108241 NA non-coding downstream 25357 5079374 ~ 5081634 (+)
G108250 NA non-coding downstream 37859 5091876 ~ 5181746 (+)
G108261 NA non-coding downstream 42764 5096781 ~ 5097095 (+)
G108262 NA non-coding downstream 43525 5097542 ~ 5098886 (+)
G108281 NA non-coding downstream 83647 5137664 ~ 5138358 (+)
G108048 NA other upstream 194776 4857911 ~ 4858274 (+)
G107955 LOC106592862 other upstream 241475 4808739 ~ 4811575 (+)
G107922 NA other upstream 307464 4744168 ~ 4745586 (+)
G106814 NA other upstream 914554 4137813 ~ 4138496 (+)
G106775 NA other upstream 1025456 4027075 ~ 4027594 (+)
G108280 NA other downstream 82339 5136356 ~ 5136992 (+)
G108354 LOC106573122 other downstream 242162 5296179 ~ 5299933 (+)
ptp4a3b LOC106596188 other downstream 452529 5480975 ~ 5542867 (+)
LOC110506279 LOC106595015 other downstream 527276 5575366 ~ 5592253 (+)
G108682 NA other downstream 665948 5719965 ~ 5725579 (+)

Expression


Co-expression Network