G108241


Basic Information

Item Value
gene id G108241
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5079374 ~ 5081634 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU123001
gtgtgtgtgtgtgtgtgtgtgtgtgatctctgtgTGTAGTGGATTTACAGTAATGAcatggagatgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgcagtgGGTTTACAGCAATtacacagaggtgtgtgtgtgtcctctgtgtgtAGTGGGTTTACAGCAATtacacagaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtagtgggTTTACAACAATGacacaggggtgtgtgtgttctctgtgtgcaGTGTGTTTACAATAAGACGCAtaagtctgtgtgtgttctccctctctcctccatgagCAATTACAGAGTTATTTACTCTCATCAATCTCTGGTGGAAGAGCCTGCTATCTGATACACCACAGAACACCAGAACACTCCTCATCATAACGCTTATAGACAGAACCCTGGAGAATTCTTCGTGATTCAGGACTATTTCTCTCACATCTGTCCATTTGGAACCACAGAATTAATATTCCAGCTTTCATGTTCTAGAAGGTTTAACGAAAACACTTCCATCAAACTGAGTGAACAATTTGGCTTTTGTGTTGTTAAGTTTGTTTTACTTCCCAATAAGGAATGGCTGTCCTCCAACCATAGTAATCTATTGAGGTAAACTATGACTGTCCTACAACCATAGTAATCTATTGAGGTAAACTATGACTATCCTCCAACCATAGTAAACTATGACAGTCCTCCAACCATAGTAATCTATTGAGGTAAACTATGACTGTCCTCCAACCATAGTAAACTATTGAGGTAAACTATGACTGTCCTACAACCATAGTAAACTATGACTGTCCTCCAACCATAGTAATCTATTGAGGTAAACTATGACTGTCCTCCAACCATAGTAATCTATTGAGGTAAACTATGACTGTCCTCCAACCATAGTAATCTATTGAGGTAAACTATGACTGTCCTCCAACCATAGTAAACTATGACTGTCCTCCAACCATAGTAATCTATTGAGGTATACTATGACTGTCCTCCAACCATAGTAAACTATTCAGAACCCAACACAAGCTGAGCCAATTCAGATCACGTTGAGTGTGTCTGTCAAAGATCCATCATACAAAATACAGCGTGTTgtaggggccctggtcaaaggcagtgctctacatagggaatagggagccgtgTGGGACGCATTGAGGGAGAATAACAAGGGTGTGTGCTGTGTGATTCTGAGAAGGGTTTTCCAGAACCATGTTGTTCAATACCATAAACACTTTAAACTCTCCTTGACCTCCTTCAGAGAGCGGCCCAGTGACCCCATCCATTAACCTAGTTTAGTTCAGCCACGACCTCTTCACCACTctcacgcaagcacacacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123001 True 1378 lncRNA 0.43 5 5079374 5081634

Neighbor

gene id symbol gene type direction distance location
LOC118937361 NA coding upstream 342090 4735246 ~ 4737284 (+)
LOC110520696 mtbp coding upstream 424641 4602958 ~ 4654733 (+)
LOC118937359 NA coding upstream 443236 4634503 ~ 4636138 (+)
col14a1a col14a1 coding upstream 506993 4327983 ~ 4572381 (+)
deptor deptor coding upstream 776838 4236880 ~ 4302536 (+)
LOC110506140 LOC106606110 coding downstream 66467 5148101 ~ 5176987 (+)
tbc1d31 tbc1d31 coding downstream 114297 5195931 ~ 5227041 (+)
LOC110520809 LOC106598492 coding downstream 146423 5228057 ~ 5235894 (+)
mrpl32 LOC106595598 coding downstream 192522 5274156 ~ 5275584 (+)
LOC118937366 NA coding downstream 202060 5283628 ~ 5285741 (+)
G108233 NA non-coding upstream 25357 5053050 ~ 5054017 (+)
G108221 NA non-coding upstream 43108 5036024 ~ 5036266 (+)
G108217 NA non-coding upstream 51962 5027180 ~ 5027412 (+)
G108214 NA non-coding upstream 54424 5024708 ~ 5024950 (+)
G108198 NA non-coding upstream 67714 5010933 ~ 5011660 (+)
G108250 NA non-coding downstream 10242 5091876 ~ 5181746 (+)
G108261 NA non-coding downstream 15147 5096781 ~ 5097095 (+)
G108262 NA non-coding downstream 15908 5097542 ~ 5098886 (+)
G108281 NA non-coding downstream 56030 5137664 ~ 5138358 (+)
G108300 NA non-coding downstream 85761 5167395 ~ 5171655 (+)
G108048 NA other upstream 221100 4857911 ~ 4858274 (+)
G107955 LOC106592862 other upstream 267799 4808739 ~ 4811575 (+)
G107922 NA other upstream 333788 4744168 ~ 4745586 (+)
G106814 NA other upstream 940878 4137813 ~ 4138496 (+)
G106775 NA other upstream 1051780 4027075 ~ 4027594 (+)
G108280 NA other downstream 54722 5136356 ~ 5136992 (+)
G108354 LOC106573122 other downstream 214545 5296179 ~ 5299933 (+)
ptp4a3b LOC106596188 other downstream 424912 5480975 ~ 5542867 (+)
LOC110506279 LOC106595015 other downstream 499659 5575366 ~ 5592253 (+)
G108682 NA other downstream 638331 5719965 ~ 5725579 (+)

Expression


Co-expression Network