G108549


Basic Information

Item Value
gene id G108549
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5391422 ~ 5391666 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU123402
TTCATCCAATGTATATGATTGGGGATAGACGTTTACATACATGTGTCTCGTCTCTCATCTATCAGTACATTAAGATGTACAGACAGATTCTGTTATGACAGCTGCATGTCATCTCTACTGCTCTTAAAGATCTCTGAACACAGACAGTTGTAATATACACACTACAGGTGGTTGCTGAGGGGacaacggctcataataacgtccagaacagagcaaatgaaatggtgtcaaacacctggaaacca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123402 True 245 lncRNA 0.41 1 5391422 5391666

Neighbor

gene id symbol gene type direction distance location
phf20l1 LOC100196869 coding upstream 41750 5321554 ~ 5349672 (+)
ccdc127a cc127 coding upstream 81387 5306276 ~ 5310035 (+)
LOC118937366 NA coding upstream 105681 5283628 ~ 5285741 (+)
mrpl32 LOC106595598 coding upstream 115838 5274156 ~ 5275584 (+)
LOC110520809 LOC106598492 coding upstream 155528 5228057 ~ 5235894 (+)
ccn4b wisp1 coding downstream 59833 5451499 ~ 5457130 (+)
ptp4a3b LOC106596188 coding downstream 89309 5480975 ~ 5542867 (+)
dync1i1 LOC105016552 coding downstream 151328 5542994 ~ 5572618 (+)
LOC110506279 LOC106595015 coding downstream 183700 5575366 ~ 5592253 (+)
jarid2a LOC106573577 coding downstream 224330 5615996 ~ 5753847 (+)
G108547 NA non-coding upstream 10984 5380078 ~ 5380438 (+)
G108529 NA non-coding upstream 24892 5365831 ~ 5366530 (+)
G108361 NA non-coding upstream 56937 5333753 ~ 5334485 (+)
G108333 LOC100380869 non-coding upstream 137390 5249713 ~ 5254032 (+)
G108551 NA non-coding downstream 6671 5398337 ~ 5398594 (+)
G108554 NA non-coding downstream 9890 5401556 ~ 5401846 (+)
G108543 NA non-coding downstream 26732 5418398 ~ 5419781 (+)
G108567 NA non-coding downstream 67840 5459506 ~ 5460437 (+)
G108598 NA non-coding downstream 100325 5491991 ~ 5492744 (+)
G108354 LOC106573122 other upstream 91489 5296179 ~ 5299933 (+)
G108280 NA other upstream 254430 5136356 ~ 5136992 (+)
G108048 NA other upstream 533148 4857911 ~ 4858274 (+)
G107955 LOC106592862 other upstream 579847 4808739 ~ 4811575 (+)
G107922 NA other upstream 645836 4744168 ~ 4745586 (+)
G108682 NA other downstream 328299 5719965 ~ 5725579 (+)
G108702 NA other downstream 388548 5780214 ~ 5782921 (+)
G108733 NA other downstream 508845 5900511 ~ 5900950 (+)

Expression


Co-expression Network