G108543


Basic Information

Item Value
gene id G108543
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5418398 ~ 5419781 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU123396
aagatacATCTCTGCTGATGGTGTGTTCTTTGATGATGGTGTGTTCTGTGCTGATGGTGTGTTCTGTGCTGATGGTGTGTTCTGTGCTGATGGTGTGTTCTGTGCTGATGGTGTGTTCTGTGCTGATGGTGTGTTCTGTGCTGATGGTGTGTTCTGTGCTGATGTGGCACTGAGAGGGAGGAGCGACTCTCTCCacagtcagctagccagccatAGCACACAGCTGGCACACTCACAGACATGTggaaggactgtgtgtgtgtgttcaagttTCAACTTTATTATCCTAGACGGCACGTTCTGTTTTAGAGTGATGTGTAGTCTTGGTGATAGGAGCCCTCAGCCAGCAACTCTGGAAGACCCTGCAACACAGCCACACCTCTAAACCACTGGCCCCTCCCAGACAGCCCTTCTTTCAAGCCCTGCAACACAGCAACACCTACTAAACCACTGCCCCTCCCACACAGCCCCTCTATAAAGCCCTGCAACACCTACTAAACCACTGGCCCCTCCCAGACAGCTCTTCTATAAAGCCCTGCA

Function

NR:

description
Low-density lipoprotein receptor-related protein 12

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123396 True 540 lncRNA 0.51 2 5418398 5419781

Neighbor

gene id symbol gene type direction distance location
phf20l1 LOC100196869 coding upstream 68726 5321554 ~ 5349672 (+)
ccdc127a cc127 coding upstream 108363 5306276 ~ 5310035 (+)
LOC118937366 NA coding upstream 132657 5283628 ~ 5285741 (+)
mrpl32 LOC106595598 coding upstream 142814 5274156 ~ 5275584 (+)
LOC110520809 LOC106598492 coding upstream 182504 5228057 ~ 5235894 (+)
ccn4b wisp1 coding downstream 31718 5451499 ~ 5457130 (+)
ptp4a3b LOC106596188 coding downstream 61194 5480975 ~ 5542867 (+)
dync1i1 LOC105016552 coding downstream 123213 5542994 ~ 5572618 (+)
LOC110506279 LOC106595015 coding downstream 155585 5575366 ~ 5592253 (+)
jarid2a LOC106573577 coding downstream 196215 5615996 ~ 5753847 (+)
G108554 NA non-coding upstream 16552 5401556 ~ 5401846 (+)
tg LOC106573164 non-coding upstream 19034 5348252 ~ 5447200 (+)
G108551 NA non-coding upstream 19804 5398337 ~ 5398594 (+)
G108549 NA non-coding upstream 26732 5391422 ~ 5391666 (+)
G108547 NA non-coding upstream 37960 5380078 ~ 5380438 (+)
G108567 NA non-coding downstream 39725 5459506 ~ 5460437 (+)
G108598 NA non-coding downstream 72210 5491991 ~ 5492744 (+)
G108608 NA non-coding downstream 88657 5508438 ~ 5509164 (+)
G108613 NA non-coding downstream 106923 5526704 ~ 5529066 (+)
G108615 NA non-coding downstream 110181 5529962 ~ 5532458 (+)
G108354 LOC106573122 other upstream 118465 5296179 ~ 5299933 (+)
G108280 NA other upstream 281406 5136356 ~ 5136992 (+)
G108048 NA other upstream 560124 4857911 ~ 4858274 (+)
G107955 LOC106592862 other upstream 606823 4808739 ~ 4811575 (+)
G107922 NA other upstream 672812 4744168 ~ 4745586 (+)
G108682 NA other downstream 300184 5719965 ~ 5725579 (+)
G108702 NA other downstream 360433 5780214 ~ 5782921 (+)
G108733 NA other downstream 480730 5900511 ~ 5900950 (+)

Expression


Co-expression Network