G108608


Basic Information

Item Value
gene id G108608
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5508438 ~ 5509164 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU123472
CATTTAAACAGTAGGCTGCAACCTCATCCTTATTACATTTAAACGGTAGGCTGCAGTATGTTACAGTATGTCTCTACAGGTGAAACAACACTGCCAGGTTACAGTATGTCTCTACAGATAAAACAACACTGCTAGGTTACAGTATGTCTCTACAGGTAAAACAACACTACCAGGTTACAGTATGTCTCTACAGGTAAAACAACACTACTAGGTTACAGTATGTCTCTACAGGTAAAACAACACTACTAGGTTACAGTATGTCTCTACAGGTAAAACAACACTACCAGGTTACAGTATGTCTCTACAGGTAAAACAACACTACCAGGTTACAGTATGTCTCTACAGGTAAAACAACACTACTAGGTTACAGTATGTCTCTACAGGTGAAACAACACTACCAGGTTACAGTATGTCTCTACAGGT

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU123472 True 423 lncRNA 0.39 3 5508438 5509164

Neighbor

gene id symbol gene type direction distance location
ccn4b wisp1 coding upstream 51308 5451499 ~ 5457130 (+)
tg LOC106573164 coding upstream 61238 5348252 ~ 5447200 (+)
phf20l1 LOC100196869 coding upstream 158766 5321554 ~ 5349672 (+)
ccdc127a cc127 coding upstream 198403 5306276 ~ 5310035 (+)
LOC118937366 NA coding upstream 222697 5283628 ~ 5285741 (+)
dync1i1 LOC105016552 coding downstream 33830 5542994 ~ 5572618 (+)
LOC110506279 LOC106595015 coding downstream 66202 5575366 ~ 5592253 (+)
jarid2a LOC106573577 coding downstream 106832 5615996 ~ 5753847 (+)
mylipb LOC106596795 coding downstream 303083 5812247 ~ 5839646 (+)
LOC110505528 gmpr coding downstream 332353 5841517 ~ 5854355 (+)
G108598 NA non-coding upstream 15694 5491991 ~ 5492744 (+)
G108567 NA non-coding upstream 48001 5459506 ~ 5460437 (+)
G108543 NA non-coding upstream 88657 5418398 ~ 5419781 (+)
G108554 NA non-coding upstream 106592 5401556 ~ 5401846 (+)
G108551 NA non-coding upstream 109844 5398337 ~ 5398594 (+)
G108613 NA non-coding downstream 17540 5526704 ~ 5529066 (+)
G108615 NA non-coding downstream 20798 5529962 ~ 5532458 (+)
G108616 NA non-coding downstream 23823 5532987 ~ 5534119 (+)
G108583 NA non-coding downstream 64287 5573451 ~ 5575009 (+)
G108588 LOC106573343 non-coding downstream 91499 5600663 ~ 5602911 (+)
G108354 LOC106573122 other upstream 208505 5296179 ~ 5299933 (+)
G108280 NA other upstream 371446 5136356 ~ 5136992 (+)
G108048 NA other upstream 650164 4857911 ~ 4858274 (+)
G107955 LOC106592862 other upstream 696863 4808739 ~ 4811575 (+)
G107922 NA other upstream 762852 4744168 ~ 4745586 (+)
G108682 NA other downstream 210801 5719965 ~ 5725579 (+)
G108702 NA other downstream 271050 5780214 ~ 5782921 (+)
G108733 NA other downstream 391347 5900511 ~ 5900950 (+)
LOC110505637 LOC106573538 other downstream 444722 5953886 ~ 5958813 (+)

Expression


Co-expression Network