G108615


Basic Information

Item Value
gene id G108615
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5529962 ~ 5532458 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU123482
gttcagttcatcaggcagtatgtacacctcacctccagattcagttcatcaggcagtatgtacacctcacctccagattcagttcatcaggcagtatgtacacctcacctctagattcagttcatcaggcagtatgtacaccacctctagattcagttcatcaggcagtatgaacacctcacctccagattcagttcatcaggcagtatgaacacctcacctccagattcagttcatcaggcagtatgaacacctcacctccagattcagttcatcaggcagtatgtacacctcacctccagattcagttcagttcatcaggcagtatgtacacctcacctccagattcagttcatcaggcagtatgaacacctcacctccagattcagttcatcaggcagtatgtacacctcacctccagattcagttcatcagacagtatgtacacctcacctctagattcaattcagttcatcagacagtatgtacacctcacctctagattcagttcagttcatcaggcagtatgtacaccacctctagattcagttcagttcat

Function

NR:

description
protein tyrosine phosphatase type IVA 3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123482 True 559 lncRNA 0.45 2 5529962 5532458

Neighbor

gene id symbol gene type direction distance location
ccn4b wisp1 coding upstream 72832 5451499 ~ 5457130 (+)
tg LOC106573164 coding upstream 82762 5348252 ~ 5447200 (+)
phf20l1 LOC100196869 coding upstream 180290 5321554 ~ 5349672 (+)
ccdc127a cc127 coding upstream 219927 5306276 ~ 5310035 (+)
LOC118937366 NA coding upstream 244221 5283628 ~ 5285741 (+)
dync1i1 LOC105016552 coding downstream 10536 5542994 ~ 5572618 (+)
LOC110506279 LOC106595015 coding downstream 42908 5575366 ~ 5592253 (+)
jarid2a LOC106573577 coding downstream 83538 5615996 ~ 5753847 (+)
mylipb LOC106596795 coding downstream 279789 5812247 ~ 5839646 (+)
LOC110505528 gmpr coding downstream 309059 5841517 ~ 5854355 (+)
G108613 NA non-coding upstream 896 5526704 ~ 5529066 (+)
G108608 NA non-coding upstream 20798 5508438 ~ 5509164 (+)
G108598 NA non-coding upstream 37218 5491991 ~ 5492744 (+)
G108567 NA non-coding upstream 69525 5459506 ~ 5460437 (+)
G108543 NA non-coding upstream 110181 5418398 ~ 5419781 (+)
G108616 NA non-coding downstream 529 5532987 ~ 5534119 (+)
G108583 NA non-coding downstream 40993 5573451 ~ 5575009 (+)
G108588 LOC106573343 non-coding downstream 68205 5600663 ~ 5602911 (+)
G108584 NA non-coding downstream 72525 5604983 ~ 5606316 (+)
G108621 NA non-coding downstream 79958 5612416 ~ 5613037 (+)
G108354 LOC106573122 other upstream 230029 5296179 ~ 5299933 (+)
G108280 NA other upstream 392970 5136356 ~ 5136992 (+)
G108048 NA other upstream 671688 4857911 ~ 4858274 (+)
G107955 LOC106592862 other upstream 718387 4808739 ~ 4811575 (+)
G107922 NA other upstream 784376 4744168 ~ 4745586 (+)
G108682 NA other downstream 187507 5719965 ~ 5725579 (+)
G108702 NA other downstream 247756 5780214 ~ 5782921 (+)
G108733 NA other downstream 368053 5900511 ~ 5900950 (+)
LOC110505637 LOC106573538 other downstream 421428 5953886 ~ 5958813 (+)

Expression


Co-expression Network