G108677


Basic Information

Item Value
gene id G108677
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5711149 ~ 5711910 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU123568
tacactacaataccaaccagctcacactcacagtacactacattaccaaccagcttacagtacactacaataccaaccagctcacagtacactacattaccaaccagcttacagtacactacaataccaaccagctcacagtacactacaataccaaccagctcacagtacactacaataccaaccagctcacagtacactacaataccaaccagctcacagtacactacaataccaaccagctcacagtacactacaataccaacCAGCTCACACTCACAGTACACTATAATACCAACCAgctcacagtacactacaataccaaccagctcacagtacactacattaccaaccAGCTCACACTCACAGTACACCACATTACCAACCAGCTCACATACCACCAGGAACAGCAAAGACCTGCCCACCTGCTGCTCAGACTAGTCTTATGTCAAGTGTCATACTTCAACATGTAGCATTATGGAAAGCAGTACAAATGCACACTGGCATTAAAGCTCAGCGTTTTTCTCTCCCATGCAACTATAT

Function

NR:

description
adhesive plaque matrix protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123568 True 543 lncRNA 0.37 2 5711149 5711910

Neighbor

gene id symbol gene type direction distance location
LOC110506279 LOC106595015 coding upstream 118896 5575366 ~ 5592253 (+)
dync1i1 LOC105016552 coding upstream 138531 5542994 ~ 5572618 (+)
ptp4a3b LOC106596188 coding upstream 168282 5480975 ~ 5542867 (+)
ccn4b wisp1 coding upstream 254019 5451499 ~ 5457130 (+)
tg LOC106573164 coding upstream 263949 5348252 ~ 5447200 (+)
mylipb LOC106596795 coding downstream 100337 5812247 ~ 5839646 (+)
LOC110505528 gmpr coding downstream 129607 5841517 ~ 5854355 (+)
LOC110505637 LOC106573538 coding downstream 242071 5953886 ~ 5958813 (+)
LOC110505679 LOC106579367 coding downstream 264290 5976200 ~ 6002265 (+)
LOC118937375 NA coding downstream 266356 5978266 ~ 5979890 (+)
G108676 NA non-coding upstream 703 5709357 ~ 5710446 (+)
G108675 NA non-coding upstream 2099 5707717 ~ 5709050 (+)
G108663 NA non-coding upstream 47290 5661042 ~ 5663859 (+)
G108653 NA non-coding upstream 65124 5644628 ~ 5646025 (+)
G108652 NA non-coding upstream 68918 5639671 ~ 5642231 (+)
G108685 NA non-coding downstream 21705 5733615 ~ 5775376 (+)
G108643 NA non-coding downstream 45094 5757004 ~ 5757953 (+)
G108644 NA non-coding downstream 46692 5758602 ~ 5760920 (+)
G108694 NA non-coding downstream 56036 5767946 ~ 5769067 (+)
G108697 NA non-coding downstream 62470 5774380 ~ 5774708 (+)
G108354 LOC106573122 other upstream 411216 5296179 ~ 5299933 (+)
G108280 NA other upstream 574157 5136356 ~ 5136992 (+)
G108048 NA other upstream 852875 4857911 ~ 4858274 (+)
G108682 NA other downstream 8055 5719965 ~ 5725579 (+)
G108702 NA other downstream 68304 5780214 ~ 5782921 (+)
G108733 NA other downstream 188601 5900511 ~ 5900950 (+)

Expression


Co-expression Network