G108682


Basic Information

Item Value
gene id G108682
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5719965 ~ 5725579 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU123575
cttcaacgtacagtctcttcaacgtacagtctcttcaatgtacagtctcttcaatatacagtctcttcaatatacagtctcttcaatatacagtctcttcaatatacagtctcttcaacgtacagtcttcaatgtacagtctcttcaatatacagtctcttcaacgtacagtctcttcaatgtacagtctcttcaacgtacagtctcttcaatatacagtctcttcaatatacagtctcttcaatgtacagtctcttcaatgtacagtctcttcaatgtacagtctcttcaatgtacagtctcttcaacgtacagtcttcaatgtacagtctcttcaatatacagtctcttcaatatacagtctcttcaacgtacagtctcttcaatatacagtctcttcaatgtacagtctcttcaatatacagtctcttcaatatacagtctcttcaatgtacagtctcttcaatgtacagtctcttcaatgtacagtctcttcaatttacagtctcttcaatatacagtctcttcaatgtacagtcttcaatgtacagtctcttcaatgtacagtctcttcaatgtacagtcttcaatgtacagtctcttcaatatacagtctcttcaatgtacagtctcttcaatatacagtctcttcaatatacagtctcttcaatgtacagtctcttcaatgtacagtctcttcaatatacagtctcttcaatatacagtctattcaatgtacagtctcttcaatatacagtctcttcaatgtacagtctcttcaacgtacagtctcttcaatatacAGTCTCTTCAACGTACAGTCTCTTCAACGTACAGTCTCTTCAACGTACAGTCTCTTCAACGTACAGTCTTCAACATACagtcttcaatgtacagtctcttcaatgtacag
>TU123579
cttcaacgtacagtctcttcaacgtacagtctcttcaatgtacagtctcttcaatatacagtctcttcaatatacagtctcttcaatatacagtctcttcaatatacagtctcttcaacgtacagtcttcaatgtacagtctcttcaatatacagtctcttcaacgtacagtctcttcaatgtacagtctcttcaacgtacagtctcttcaatatacagtctcttcaatatacagtctcttcaatgtacagtctcttcaatgtacagtctcttcaatgtacagtctcttcaatgtacagtctcttcaacgtacagtcttcaatgtacagtctcttcaatatacagtctcttcaatatacagtctcttcaacgtacagtctcttcaatatacagtctcttcaatgtacagtctcttcaatatacagtctcttcaatatacagtctcttcaatgtacagtctcttcaatgtacagtctcttcaatgtacagtctcttcaatttacagtctcttcaatatacagtctcttcaatgtacagtcttcaatgtacagtctcttcaatgtacagtctcttcaatgtacagtcttcaatgtacagtctcttcaatatacagtctcttcaatatacagtctcttcaatgtacagtcttttaaatgtacagtctcttcaatgtacagtctcttcaatgtacagtctcttcaacgtacagtcttcaacgtacagtctcttcaatgtacagtctcttcaacgtacagtcttcaacgtacagtctcttcaatgtacagtctcttcaatatacagtctcttcaatgtacagtctcttcaatatacagtctcttcaatatacagtctcttcgatgtacagtctcttcaacgtacagtctcttcaatatacagtctcttcaatgtacagtctcttcaatgtacagtctcttcaatgtacagtcttcaatgtacagtcttcaatgtacagtcttcaatgtacagtctcttcaacgtacagtctcttcaacgtacagtctcttcaacgtacagtctcttcaatgtacagtctcttcaatgtacagtctcttcaatatacagtctcttcaatgtacagtcttcaatgtacagtcttcaatgtacagtctcttcaatgtacagtctcttcaatgtacagtctcttcaacgtacagtctcttcaatgtacagtcttcaatgtacagtctcttcaatgtacagtctcttcaatatacagtctcttcaatatacagtctcttcaacgtacagtctcttcaatatacagtctcttcaacgtacagtctcttcaacgtacagtctcttcaatgtacagtctcttcaatgtacagtctcttcaatatacagtctcttcaatatacagtctcttcaatgtacagtctcttcaatgtacagtctcttcaatgtacagtctcttcaatatacagtctcttcaatgtacagtctcttcaatgtacagtctcttcaacgTACAGTCT

Function

NR:

description
melanoma-associated antigen C1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123575 False 913 TUCP 0.49 3 5719965 5725579
TU123579 True 1496 TUCP 0.25 5 5719965 5725382

Neighbor

gene id symbol gene type direction distance location
LOC110506279 LOC106595015 coding upstream 127712 5575366 ~ 5592253 (+)
dync1i1 LOC105016552 coding upstream 147347 5542994 ~ 5572618 (+)
ptp4a3b LOC106596188 coding upstream 177098 5480975 ~ 5542867 (+)
ccn4b wisp1 coding upstream 262835 5451499 ~ 5457130 (+)
tg LOC106573164 coding upstream 272765 5348252 ~ 5447200 (+)
mylipb LOC106596795 coding downstream 86668 5812247 ~ 5839646 (+)
LOC110505528 gmpr coding downstream 115938 5841517 ~ 5854355 (+)
LOC110505637 LOC106573538 coding downstream 228402 5953886 ~ 5958813 (+)
LOC110505679 LOC106579367 coding downstream 250621 5976200 ~ 6002265 (+)
LOC118937375 NA coding downstream 252687 5978266 ~ 5979890 (+)
G108677 NA non-coding upstream 8055 5711149 ~ 5711910 (+)
G108676 NA non-coding upstream 9519 5709357 ~ 5710446 (+)
G108675 NA non-coding upstream 10915 5707717 ~ 5709050 (+)
G108663 NA non-coding upstream 56106 5661042 ~ 5663859 (+)
G108653 NA non-coding upstream 73940 5644628 ~ 5646025 (+)
G108685 NA non-coding downstream 8036 5733615 ~ 5775376 (+)
G108643 NA non-coding downstream 31425 5757004 ~ 5757953 (+)
G108644 NA non-coding downstream 33023 5758602 ~ 5760920 (+)
G108694 NA non-coding downstream 42367 5767946 ~ 5769067 (+)
G108697 NA non-coding downstream 48801 5774380 ~ 5774708 (+)
G108354 LOC106573122 other upstream 420032 5296179 ~ 5299933 (+)
G108280 NA other upstream 582973 5136356 ~ 5136992 (+)
G108048 NA other upstream 861691 4857911 ~ 4858274 (+)
G108702 NA other downstream 54635 5780214 ~ 5782921 (+)
G108733 NA other downstream 174932 5900511 ~ 5900950 (+)
G108775 LOC106606109 other downstream 331417 6056996 ~ 6058335 (+)

Expression


Co-expression Network