G108647


Basic Information

Item Value
gene id G108647
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5883094 ~ 5885133 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU123523
GCGGTCGGTCTTCATTCCCTGAGAGCACGGGGGAAGAAAAGCCATCACTTCCCCTTACCGCCGTAGATAGGGCATGGAGTGGAGCGGTCGGTCTTCTTGAACACGTTGTATTTACATGCCTTTTGGTCAAACTCCATCATGCAATCATCCGGAAATCTTGTGGGCTCAGAATACCTGCAATCAAACAATCAACATCAGCAAAtgctttggtaaaaaaaaaaatgtatggactttcactcactcattctcaaatcaaatattatttgtcatgtgcgctggAATTCAACAGATGTAGACCgtaccgtgaaatgcttccttacaagcccttacaatgcagttaagaaaatatttactaaataaactaaagtttgaaaaaagtaacacaataaaataacgaggATATGTACAGTGGGTAGTGAAttaatgtgcgggggtacaggttagtcgaggtaattgaggtaatttgtacatgtaggtagaggtaaagtgactatgcatcgatTAAACACCGTTCAGGCctccatttgattaattgttcagggagacttatggtttgggggtagaagctgttaaggagccttttggacctagacttggcgttctggtaccgcttgccgtgcgatagcagagagaatagtcaatggcttgggtggctggagtctttgaaaacaAATTTgggcctctataccaggcggtgtcagaggtctCGGATCGCAGGGAACTTGCTGGGccgcacgcactaccctctgtagcgcattttagtcagaggccgagcagttgccataccaagcggtgatgcagccagtcaagatgctctcgatggtgcagctgtataactatttgaggatctgaggacccataccaaatcttttccatctcctgggggggaatagtcatcacgactgtcttggtgtgtttggaccatgatagtttgttggtgatgtggacacgggaagctctcgacccgctccaccacagccctgtcgatgtgaatgggggcgtgttcggtcctccttttcctgtagtccacgatcagctcctttgtcttgctcatgttgagggagaggagtgggtctagggtttccgggatgatagtgttgatgcgagtcatgaccagcctttcaaagcacttcatggctacagatgtgagcgctacagggcgatagtcatttaggcaggttactttggcggtcttgggcacagggactatggtggtctagttgaaacatgtaggtattacagactgggtcagttagaggttgaaaatgtcagtgaagacttaAACCGCCGCTTGTAGAGATGGAAATAATGAGCACTGTGAGGGTTATATGGACCAGTGTGGTGGTACAGACTGGGAAGGCTGAGGGTTATATGGACCAGTGTGGTGGTACAGACTGGGAAGGCTGAGGGTTATATGGACCAGTGTGGTAGTACAGACTGGGAAGGCTGAGGGTTATATGGACCAGTGTGGTGGTACAGACTGGGAAGGCTGAGGGTTATATGGACCAGTGTGGTGGTACAGACTGGGAAGGCTGAGGGTTTTATTGACCAGACATTTAGTGGGTGCTAGAATAAAAGCTGTGTATGGTTCTCACGCCTGGCAGCATTGCATGTCCCCGTTGGCTTGACAATAGCAGTTCATGCAATCACTGGTCCTCCAGCGGGACCCGATATCATGCCACGTCCCATCCTTGTCGTAAAGACACTGCTTCATGCCTAAACAAGGAAACAATATACCATAT

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: neuropeptides capa receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123523 True 1742 lncRNA 0.44 3 5883094 5885133

Neighbor

gene id symbol gene type direction distance location
LOC110505528 gmpr coding upstream 28920 5841517 ~ 5854355 (+)
mylipb LOC106596795 coding upstream 43448 5812247 ~ 5839646 (+)
jarid2a LOC106573577 coding upstream 129247 5615996 ~ 5753847 (+)
LOC110506279 LOC106595015 coding upstream 290841 5575366 ~ 5592253 (+)
dync1i1 LOC105016552 coding upstream 310476 5542994 ~ 5572618 (+)
LOC110505637 LOC106573538 coding downstream 68848 5953886 ~ 5958813 (+)
LOC110505679 LOC106579367 coding downstream 91067 5976200 ~ 6002265 (+)
LOC118937375 NA coding downstream 93133 5978266 ~ 5979890 (+)
setd2 LOC106593284 coding downstream 117859 6002992 ~ 6049501 (+)
LOC118937376 NA coding downstream 206946 6092079 ~ 6093940 (+)
G108630 NA non-coding upstream 1058 5881143 ~ 5882036 (+)
G108722 NA non-coding upstream 2628 5879937 ~ 5880466 (+)
G108646 NA non-coding upstream 27311 5855255 ~ 5855783 (+)
G108712 NA non-coding upstream 48575 5833656 ~ 5834519 (+)
G108723 NA non-coding downstream 1127 5886260 ~ 5886472 (+)
G108728 NA non-coding downstream 10675 5895808 ~ 5896059 (+)
G108730 NA non-coding downstream 13242 5898375 ~ 5898791 (+)
G108731 NA non-coding downstream 14591 5899724 ~ 5900018 (+)
G108736 NA non-coding downstream 26555 5911688 ~ 5911936 (+)
G108702 NA other upstream 100450 5780214 ~ 5782921 (+)
G108682 NA other upstream 157515 5719965 ~ 5725579 (+)
ptp4a3b LOC106596188 other upstream 340229 5480975 ~ 5542867 (+)
G108354 LOC106573122 other upstream 583161 5296179 ~ 5299933 (+)
G108733 NA other downstream 15378 5900511 ~ 5900950 (+)
G108775 LOC106606109 other downstream 171863 6056996 ~ 6058335 (+)
G108805 LOC106594197 other downstream 311799 6151712 ~ 6199341 (+)

Expression


Co-expression Network