G108627


Basic Information

Item Value
gene id G108627
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 5955703 ~ 5962125 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU123503
TTAGGTCATTGGTTCTTTTATTTGGCAGTTCACATGTTCCCTTGTCTTTAGCACAGAAAATAATGAGATGGTACATGTCATGTTGACAGAAGCCCAGAGCTTTATTCAGCGAAGCTTGAGACACATGGAGGGAGAACATTTGTACTGTAGTAGTCAGCTTGTGGAGGATGCAGGCAGATCGTTGTGACATATTTAAACAGAGTCATTGTAGTGTGCCGAATGTGGAGTATCCATTCTCTATGTATGGAACTACCAGAGAGATATGACACCTcacttgaaacacacacacacacacacactcacacacacacacacactcacacacacactcactcacacacacacacacacacacacacacactcacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcacacacacacacacacacacacacacacgtagacttAGAGTGAACATGTCTGTCAAGATAAAGGGAAGGGGGCTATAGAACATTCTACTGGCCAGGATGTCATGTATGGTGGCTCTATGATGTCATGTATGGTGGCTCTATGATGTCATCATAACATTCAAGTCTCCAGATTCAGTGGACATATCAGACTAGAGTAAGCTAAAGTTAATCACctggcctgcatcccaaatggaacactatacCCTTTTTTTCTGCACTActctggtcaacagcagtgcactttatagggaacagGCTGACATATATAGTCAGGGGTCAGTCTGGAGGAAGTGATAAACAGCTGCTCCCTCTGGAGACACATTGTTAAAGAGGACCAATCACCTCTCTTGTTCAAGCTACCTCAAGATCATTTGAGGACATGTGGACATTTTAAGCCGAGAGTTTGGCAGATTTTTAATGTGAGTTCACAGcatgtgtgtaattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgcgtgcgtgtgtgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtccgtgagtgtatgtgtgtgtgtgcgtgcgtgcgtccgtgagtgtgtgtgtgaggtgataAAATGGGATGCGCTGTCAGGAGTCTGAGTTCACTACCTGTTAACATTCTTCACAAAGACACAGAAACTGACATCATCAGAAAACAATGCAAACGTCAGCTAACAACCAACTCACAACACCAGAAAAGACTTTCACAAAGAAATGATTGTAGATTCAAATTTCAAGAACCAATAAATAATTAGATAACAAAAGAAACATTTGAAATTGTACAACACAGTGCATTTGATACACTTGTTTGTGCTCAATCAGCCTAGCCTACCCATTAAGATAGATACAAAAATGAAGTATTTACAAAATAATACCCATGTTTTCATGTTGTTGATTTTTTTCCCCTTCGGAAAAAATAAATCATTAATTATCTAATGGAAAATACTGTTAAtactggtggtgtgtgtgtgtgtgtgtgagtgtgtgtggtgtgtgtgtggtgtgtgtgtgtggtgtgtgtgtggtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtgtgtggtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtgtggtgtggtgtgtgtgtggtgtgtgtggtgtgtgtggtgtggtgtgtgtgtgtgtgtgtgtggtgtggtgtgtgtgtggtgtgtgtgtgtggtgtgtgtgtggtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatggatgggtCAGGGTGGGTGGTGTAGTGTGTTGGTAGTGAAGTCCTCCACCTTCCAGGACTCCAGGGCTTGCTGTCTGCTGTGGAGTTTCCAGGGGTGAGGCTGGGTTGGGGGACGTGATTGGTGGACGTTGGGGAGAGGTGGGGCTCACGCTGTCAGCTCCTCCCTCAGCTCTTTGTTCCTGCGCACCACGGCTGCGTGTCTCTCCTGAAACACAGGTCACAGACACCACAGATAGAGAGGAGGAAGTTAACATCCACACTGGACAGGAAGTTAGAGCTGTAGCTTACACAGGCAGGATGCACCCCTAGTGGTCTCTTAGAATGAAGTCTCTATTTTCATTCTAGTTCTATCATTCTAATTCTAGAACACACCTTCTCCTGCAGGCGTTCCATCATGGCTGCCAGGTGGGCCTCCCGGTTCTCCTTGATTTGCTCCATCTTCATGGTGAGCTTCTCCTCTGCCATTTTGCTGAAGTTGTTGTTCTCTTCCATGGCCTTGAGCAGCACATCCCTCTCATGCTCCCTCttctctgccagggccctcagcACCTGGGCCTCCTGGGACTGGACCACAGAGAGACCATGGATGTCACCATAGAGTTGGAATTACTTGTCTGAAGCACCTCAGACAATagtaattttttttaa

Function

NR:

description
PREDICTED: stathmin-2-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123503 True 2501 lncRNA 0.47 2 5955703 5962125

Neighbor

gene id symbol gene type direction distance location
LOC110505637 LOC106573538 coding upstream 258 5953886 ~ 5958813 (+)
LOC110505528 gmpr coding upstream 101529 5841517 ~ 5854355 (+)
mylipb LOC106596795 coding upstream 116057 5812247 ~ 5839646 (+)
jarid2a LOC106573577 coding upstream 201856 5615996 ~ 5753847 (+)
LOC110506279 LOC106595015 coding upstream 363450 5575366 ~ 5592253 (+)
LOC110505679 LOC106579367 coding downstream 14075 5976200 ~ 6002265 (+)
LOC118937375 NA coding downstream 16141 5978266 ~ 5979890 (+)
setd2 LOC106593284 coding downstream 40867 6002992 ~ 6049501 (+)
LOC118937376 NA coding downstream 129954 6092079 ~ 6093940 (+)
ccdc12 ccd12 coding downstream 269244 6231369 ~ 6250042 (+)
G108648 NA non-coding upstream 7362 5947511 ~ 5948341 (+)
G108753 NA non-coding upstream 10712 5943752 ~ 5944991 (+)
G108752 NA non-coding upstream 14447 5941005 ~ 5941256 (+)
G108736 NA non-coding upstream 43767 5911688 ~ 5911936 (+)
G108731 NA non-coding upstream 55685 5899724 ~ 5900018 (+)
G108756 NA non-coding downstream 21151 5983276 ~ 5983771 (+)
G108758 NA non-coding downstream 31408 5993533 ~ 5993799 (+)
G108760 NA non-coding downstream 33677 5995802 ~ 5996126 (+)
G108789 NA non-coding downstream 121011 6083136 ~ 6085913 (+)
G108773 NA non-coding downstream 125051 6087176 ~ 6087617 (+)
G108733 NA other upstream 54753 5900511 ~ 5900950 (+)
G108702 NA other upstream 173059 5780214 ~ 5782921 (+)
G108682 NA other upstream 230124 5719965 ~ 5725579 (+)
ptp4a3b LOC106596188 other upstream 412838 5480975 ~ 5542867 (+)
G108775 LOC106606109 other downstream 94871 6056996 ~ 6058335 (+)
G108805 LOC106594197 other downstream 234807 6151712 ~ 6199341 (+)
G108874 LOC106573552 other downstream 319946 6282071 ~ 6285940 (+)
G109020 NA other downstream 670953 6633078 ~ 6633913 (+)

Expression


Co-expression Network