G108802


Basic Information

Item Value
gene id G108802
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6136775 ~ 6137832 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU123743
taactaaatagctgactggctggctaactaaatagctgactggctggctaattaaatagctgactgactggataactaactaaatagctgactggctggctaactaaatagctgactggataactaactaaatagctggctggctggctaactaaatagctgactggataactaactaaatagctgactggataactaactaaatagctgactggctggctaactaaatagctgactggataactaactaaatagctggctggctggctaactaaatagctgactggataactaactaaatagctgactggataactaacta

Function

NR:

description
pollen-specific leucine-rich repeat extensin-like protein 1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123743 True 322 lncRNA 0.39 2 6136775 6137832

Neighbor

gene id symbol gene type direction distance location
LOC118937376 NA coding upstream 42835 6092079 ~ 6093940 (+)
setd2 LOC106593284 coding upstream 87274 6002992 ~ 6049501 (+)
LOC110505679 LOC106579367 coding upstream 134510 5976200 ~ 6002265 (+)
LOC118937375 NA coding upstream 156885 5978266 ~ 5979890 (+)
LOC110505637 LOC106573538 coding upstream 181330 5953886 ~ 5958813 (+)
ccdc12 ccd12 coding downstream 93537 6231369 ~ 6250042 (+)
cep72 LOC106573558 coding downstream 148726 6286558 ~ 6312599 (+)
trip13 LOC106590995 coding downstream 240541 6378373 ~ 6389788 (+)
nkd2b LOC106574162 coding downstream 264844 6402676 ~ 6499698 (+)
zgc:158766 LOC106590969 coding downstream 407536 6545368 ~ 6629469 (+)
G108799 NA non-coding upstream 2335 6133376 ~ 6134440 (+)
G108779 LOC106573589 non-coding upstream 17731 6117837 ~ 6119044 (+)
G108773 NA non-coding upstream 49158 6087176 ~ 6087617 (+)
G108789 NA non-coding upstream 50862 6083136 ~ 6085913 (+)
G108805 LOC106594197 non-coding downstream 13880 6151712 ~ 6199341 (+)
G108818 NA non-coding downstream 39422 6177254 ~ 6178243 (+)
G108828 NA non-coding downstream 64483 6202315 ~ 6203532 (+)
G108829 NA non-coding downstream 65941 6203773 ~ 6204116 (+)
G108836 NA non-coding downstream 77420 6215252 ~ 6216642 (+)
G108775 LOC106606109 other upstream 78440 6056996 ~ 6058335 (+)
G108733 NA other upstream 235825 5900511 ~ 5900950 (+)
G108702 NA other upstream 354131 5780214 ~ 5782921 (+)
G108874 LOC106573552 other downstream 144239 6282071 ~ 6285940 (+)
G109020 NA other downstream 495246 6633078 ~ 6633913 (+)
rbm24b LOC106596654 other downstream 718254 6855864 ~ 6868976 (+)
malsu1 malsu1 other downstream 770715 6908511 ~ 6911256 (+)

Expression


Co-expression Network