G109080


Basic Information

Item Value
gene id G109080
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6843876 ~ 6844930 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU124151
CtgctcccctgcccagtcatatgaaatccatatttaagggcctaatgaatgtattgaaattgactgatttcctcatatgaactgtaactctgtaaaatctgtgaagttgttgcatgttgtgtttatatttgtgttgaGTATATTACTGTATGCTTCATAGTGGAAATGCTGTGTCATTGGTGCAATATTATTTTCAAAGGTTGTGTTTTAAGAGTGGTTTCACTAGGTGGTGCTAGTTAACCGTCTGAGTTAGAGGTAGTGCTCTCCACGGTGACCCAGAGAAGAGACTGAGTTAGAGGTAGTGCTCTCCACAGTGACCCAGAGAAGAGACTGAGTTAGAGGTTGCCGGacagcagtggcgatttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU124151 True 366 lncRNA 0.42 2 6843876 6844930

Neighbor

gene id symbol gene type direction distance location
LOC110506079 NA coding upstream 1783 6841032 ~ 6842093 (+)
kif13a kif13a coding upstream 4412 6688891 ~ 6839464 (+)
LOC110505984 LOC106574154 coding upstream 155864 6685900 ~ 6688012 (+)
ptdss1a LOC106595791 coding upstream 159060 6653202 ~ 6684816 (+)
LOC110505995 LOC106573077 coding upstream 194082 6645216 ~ 6649794 (+)
rbm24b LOC106596654 coding downstream 10934 6855864 ~ 6868976 (+)
grinab grina coding downstream 31057 6875987 ~ 6889713 (+)
LOC118937417 LOC106592634 coding downstream 46518 6891448 ~ 6896287 (+)
smpd5 LOC106577403 coding downstream 52568 6897498 ~ 6908200 (+)
malsu1 malsu1 coding downstream 63581 6908511 ~ 6911256 (+)
G109072 NA non-coding upstream 30460 6812794 ~ 6813416 (+)
G108934 NA non-coding upstream 50697 6792011 ~ 6793179 (+)
G108930 NA non-coding upstream 89947 6709124 ~ 6753929 (+)
G109032 NA non-coding upstream 171776 6670698 ~ 6672100 (+)
G109030 NA non-coding upstream 179146 6663269 ~ 6664730 (+)
G109070 NA non-coding downstream 14742 6859672 ~ 6863903 (+)
G109085 NA non-coding downstream 19133 6864063 ~ 6864303 (+)
G109069 NA non-coding downstream 24670 6869600 ~ 6870945 (+)
G109088 NA non-coding downstream 26581 6871511 ~ 6871727 (+)
G109092 NA non-coding downstream 34344 6879274 ~ 6879556 (+)
G109020 NA other upstream 209963 6633078 ~ 6633913 (+)
G108874 LOC106573552 other upstream 557936 6282071 ~ 6285940 (+)
G108805 LOC106594197 other upstream 644535 6151712 ~ 6199341 (+)
G108775 LOC106606109 other upstream 785541 6056996 ~ 6058335 (+)
LOC110505679 LOC106579367 other upstream 841682 5976200 ~ 6002265 (+)
LOC110535156 LOC106606167 other downstream 96586 6941465 ~ 6944043 (+)
G109821 NA other downstream 290317 7135247 ~ 7140979 (+)
pde11al LOC106573285 other downstream 458098 7282430 ~ 7304709 (+)

Expression


Co-expression Network