G111662


Basic Information

Item Value
gene id G111662
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9070389 ~ 9072446 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU127383
TTCTTAAGAGATCTTTTATTGCCAGATGTTCATACATACAGTTGTTGTTAGAGGGGCGAAGACGCAAGAAAAGCTCACTGAGTCTGGATGTGCTTGTGTCCAAGTCCCACACTGACTTACAGTACAGCAGTGGGGGAGAAGGAGATAATATAGCCAATCACAGAAAGcatggtctgcatcccaaatggcaccccattccctacacagtacactacttttggactctatgggtcctggtaaaaaaaaaagaagaagaagtagtgcactctatagggaatagggtgccatttgggacacactccaTGTTTTATTGAGTGCAATGTAATGAAAGGCTGCTGAAGGTTCCATAGGAGTACTAGgggctgaagcgttacagatggCATCCTTTCAGATggagccgacatatgcagtgtttaccatgaatgcagtctATGCTAATGCAGGAACATTTTCAATCACGCTAAAACGCTGAagttcagcgatacagattgaatccagTCCTAGGTGGTAACGCTGAagttcagcgatacagattgaatccagTCCTAGGTGGTTACATCGACCACTCCGTCTATCCTAATGTGTTTCAAGTCATGTGGGGAGGGAAAACAATATAACATAACAAACGCTAAAGCCTCTgagcattcaaatcaaatcaaatctcccTTTATCCATAACATGACGTGACACGCCTCATCTGTAGACATTTTTTAAAACCATGCATGGTTTGGTTTTCACTTAAATTACAATTTCCATAGAATAACACTGCTTTGTTTAACCTATAATACACTATTCTATACAAAATACCAACAAGTGAAAGACATAAAACACATCGTTGTGACATTTACATCATTTTACAGCATTCTTCCCCCATTATTACTTTACATGTACTCAGAGTTACAATACTCCAAATGACCATCTGAGAAAAAGGCTGAAAGAATATACTTTCTCACTGTTAATGTTCTGCTTTTCCTCAATGAAAGACGCATGCTACAAATGGTGTATAAGGTGCTGGATAGTTTCATACCAAATTGTAAGTTCTCCATGAGAAAGACGTATACTTGTAGGTGTGTGACTGTTTTGTTGTGGCTTGTGTTGCTGCAAGCATATATTCTTTCATGTTTAGTCGACAATGGCTGTTTCCATCACAGTGAATGTTTGTGACTGTGTAGAATCATCATACAACTCTCTACACAATTCCAAATGTAAACTGGAATTATGCACTTTAAAAAACGAGCTATCTAGCTGACTGTAACCACTACACCTCAATAAAAGTCAACAGTGTAGGAACGTTCAGATATACTATATGCCCTTATTCTACATTAAGGCAAATGGAAACAACTAATATCTTTTTGTAGATcatttttttgtgacaaaactgctaaAATGGAAATATTGTCATTAGACAATTAGCTATAACCCTAGTTTAGTTGTGATTCGAAATAAAACTGCAATGTGCAAATGGAAGAGGAGAACTGTTTCCAAGACATAAAGCCATGGAACATAGTACTGACATGTATTCATCTAGGAAAGAATGAAAACAGGAAGTCACAGCTGTTGAATTGACCTAAGGAGGAAGTCCTTTCATTACACACAGTAACATTTTCTGTAACAAATATCTCCCTGAACATTACTGAATAAATAGACTTGTCTATAAAAGGCACTCATTCAGTTGAAGCTCATATCGTTTTTCTATAATAACCAATTATTCATCTCTTACTTTTTTAAACAATTGTTAAATGTTGCCTAACTCTTTGAcacagagagtaaagagagagtacGTAAATGTAACTAGTGTAAATATATCTCCCTGTCGGTTCTACCACTCCACAATAAGTATGTCTCAACCATAGAAGAAGGCTTTGCAGCGAACAACAGCAGGAGCTTGCGTAACACTGGTGTCATGCATGCAACACGTGTGTAATTGTAGGTACTAGGCAGGCCTATAGGTTAAAGCTGGAACATGTATGTTGTAGGCAGGCCTATAGGCTAAAGCTGTAACATTCGCTACGCGTGATTGACAGACGTCAGTCTGTCTGGACCCAGTAGCATCGTCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU127383 True 2058 lncRNA 0.43 1 9070389 9072446

Neighbor

gene id symbol gene type direction distance location
LOC110514444 LOC108270036 coding downstream 251312 8804202 ~ 8819077 (-)
LOC110516599 LOC106606020 coding downstream 268386 8791636 ~ 8802003 (-)
LOC110519098 LOC106594466 coding downstream 287402 8769881 ~ 8782987 (-)
LOC110535184 LOC106605879 coding downstream 318225 8693136 ~ 8752164 (-)
LOC110506629 LOC106573674 coding downstream 557028 8507579 ~ 8513361 (-)
LOC110506642 LOC106606082 coding upstream 2327 9074773 ~ 9087920 (-)
LOC110506677 c4 coding upstream 44120 9116566 ~ 9141714 (-)
LOC110534035 LOC106573444 coding upstream 116482 9188928 ~ 9211433 (-)
LOC110534043 LOC106606076 coding upstream 142937 9215383 ~ 9220273 (-)
LOC110510828 LOC106606088 coding upstream 172999 9245445 ~ 9284745 (-)
G111664 NA non-coding downstream 331 9068713 ~ 9070058 (-)
G111656 NA non-coding downstream 4402 9065660 ~ 9065987 (-)
G111651 NA non-coding downstream 18495 9050914 ~ 9051894 (-)
G111638 NA non-coding downstream 38893 9031043 ~ 9031496 (-)
G111637 NA non-coding downstream 39512 9030557 ~ 9030877 (-)
G111665 NA non-coding upstream 1650 9074096 ~ 9074608 (-)
G111667 NA non-coding upstream 64825 9137271 ~ 9138195 (-)
G111680 NA non-coding upstream 75945 9148391 ~ 9148593 (-)
G111688 NA non-coding upstream 92594 9165040 ~ 9165708 (-)
G111692 NA non-coding upstream 103782 9176228 ~ 9190500 (-)
G111659 NA other downstream 2327 9067612 ~ 9068062 (-)
G111650 NA other downstream 19591 9050289 ~ 9050798 (-)
G111044 NA other downstream 547628 8522002 ~ 8522761 (-)
G111855 NA other upstream 366916 9439362 ~ 9439938 (-)
G111955 NA other upstream 562091 9634537 ~ 9635130 (-)
G112066 NA other upstream 688854 9761300 ~ 9761665 (-)
G112076 LOC105018850 other upstream 706565 9779011 ~ 9780455 (-)
LOC110493960 LOC106606059 other upstream 928284 10000730 ~ 10007883 (-)

Expression


Co-expression Network