XLOC_020962


Basic Information

Item Value
gene id XLOC_020962
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 11697272 ~ 11698675 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042352
TGGGGTTCTCCTTTGCTAGGTCTATTTAGACTTGATTATCCCTTGATGTTAGCACAAATAGTAGCCAAAAGCAAAGTTTAGTCTCTGAGATTTATTAAGCAAAGATTTAAAAAGGAATAACTTAAAGAGCCTGCTGAAGGCCTTCAGCAGCGTCACAGACTGGACAAGGGAAGAAAACTCAGAGCGTCCCTCAAGCCACGTGAGGATGGGCGGTGAAAGCAGATCAGGTGAGCCTTGGCGTGCACAGACCCCTCATGGAGCGACCAGCACCCCAACCTGCCGACAGGAGAGCAAGAGCTGGACTTGATCAGGACTGAGAATGATGGGCTTTACCACAGAAGAGCTTGATGAGGATGAGGACGAAGATGACGAGGACTGGGCAGAGCGCAGAAGCTCTTCTGGATATGATTTCATAAACCACTATTGCAACAGCAGCCACACCCACCACAGCAGCGACAACCAATCGAATCACAGCTTCAGTGAAACTACAACAGTGAATTGAGCCTGAAGACAGAAAATGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042352 True 521 lncRNA 0.48 2 11697272 11698675

Neighbor

gene id symbol gene type direction distance location
XLOC_020961 NA coding downstream 22851 11672189 ~ 11674421 (-)
XLOC_020960 mettl21a coding downstream 35548 11657139 ~ 11661724 (-)
XLOC_020959 dpp4 coding downstream 48950 11628438 ~ 11648322 (-)
XLOC_020958 gcga coding downstream 71254 11617520 ~ 11626018 (-)
XLOC_020957 pcyt2 coding downstream 82299 11596432 ~ 11614973 (-)
XLOC_020963 crygs1 coding upstream 11792 11710467 ~ 11714158 (-)
XLOC_020964 krt222 coding upstream 18754 11717429 ~ 11729350 (-)
XLOC_020965 ptpn4b coding upstream 79378 11778053 ~ 11833334 (-)
XLOC_020966 pth2rb coding upstream 199986 11898661 ~ 11955907 (-)
XLOC_020967 tmem163b coding upstream 395809 12094484 ~ 12161095 (-)
XLOC_020951 NA non-coding downstream 593001 11102905 ~ 11104271 (-)
XLOC_020948 NA non-coding downstream 599435 11082942 ~ 11097837 (-)
XLOC_020950 BX649485.2 non-coding downstream 606173 11090338 ~ 11091099 (-)
XLOC_020949 NA non-coding downstream 607572 11087404 ~ 11089700 (-)
XLOC_020969 CR847870.5 non-coding upstream 886164 12584839 ~ 12584954 (-)
XLOC_020972 CR847870.3 non-coding upstream 1000446 12699121 ~ 12726556 (-)
XLOC_020975 NA non-coding upstream 1079214 12777889 ~ 12786441 (-)
XLOC_020979 NA non-coding upstream 1234615 12933290 ~ 12940709 (-)
XLOC_020980 NA non-coding upstream 1251145 12949820 ~ 12950292 (-)

Expression


Co-expression Network