XLOC_020973 (plcd4a)


Basic Information

Item Value
gene id XLOC_020973
gene name plcd4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 12729329 ~ 12746539 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041259
GAGATACCTAAAAAATGACAGAACGACAGATGGCTTCTACTGAAAGGAGCCTACGTATCCAGGCTGATGATGACCTGAAGTCCATGATTGTTGGCACAGTGATGAGAAAAATCAAGTCTCGCACATGGAAAAAGCAGCGTTACTTCAGGCTACAAGAagactgcatgactatctggtaCCAGAGCAAGAAAGCAGGAAATGCCCACTCCACCTtTTCTGTGGGTGATGTTGAGGCTGTACGGGAAGGGCACCAATCAGAGGTTCTACTCAGCATTGCCGACGAGTTTCCTCCTGACCGGTGCTTCACCCTTGTGTTTCGTGGACGAAGAGGCAACTTGGACCTAGTGGCCGAATCCACAAAGGAGGCACAATCATGGATAAAAGGGATACGCAAACTCATCGATAACCTAGAGAACATGGGGCAGAGAGAGAAACTGGACCAATGGATCTGTGACTGGTTTAAAAAGGCAGACAAAAACCGAGACGGACGGATGAACTTTAAGGAGGTCAGAGATCTGTTGAAGATGATGAACGTGGACATGAACGAGCACCACGCTCTCCGTCTCTTCACGATGGCGGATCGGTCTCAGTCGGGAACACTCGAGGATGATGAGTTTGTGTTGTTTTATAAGATGCTGACTCAGCGCGAGGACATCCTGCGAGTGTTTCAGGAATATTCAGCCGATGGACAGAAGCTAACGCTCAAAGATCTGAAAGATTTCTTGCAGGAGGAACAGTTACATGAGGACGGAGTTCAACAATACGCACTTAATCTCATTGAACGCTTTGAACCATCTGACACGGCGAAAATGTTACAAGCAATGACGTTTGATGGTTTCCTAATGTACCTGAGCTCATCAGAGGGCTCCATCTTCAACCCTGCAATGCTCGAACTCTACCAAGACATGTCTCAGCCTCTCTGCCATTATTTCATATCATCTTCTCATAACACATACCTACTGGAGGACCAAATCAGAGGACTTAGCAGTGTGGAAGGCTATATACGAGCACTGAAACGTGGCTGTCGATGTGTGGAAGTGGACTGTTGGGATGGACCAAATGGAGAGCCAATTGTCTATCATGGGCACACATTCACATCCAAGATCTTCTTCAAGGATGTTGTCACTGTGCTGGGCAACTATTCTTTTAAAGCATCAGAGTACCCTGTCATCCTGTccattgagaaccactgcagtgTAGAGCAGCAGAAAATCATGGCCCAACACCTCACCCAGATCCTGGGAGACAAGCTGCTGAAAAGCACTTTAGATGGAAAGATTCCCCTCGGCCTCCCGTCCCCTGAGgatctGAAAGGGAAGATTCTGTTGAAAGGAAAGAAGATAGGTGGATTAGAGGATGGCATGAATGGAGTAGTGGATGACCCTTTGATGGGAGAGGTGAGCGACGAAGAGGAGGCCACTGAAATTGAGGATGAAAATCATCGCAACAACAGCATACGACACAGAAGCAAGAAATCCAAACAGCGGCTGTCTAAAGAGCTGTCCGACTGTGTGGTTTACTGCAAGAGTGTCCACTTTAGCAGCTTTAAACATTCACGAAATCACTCCAAGTTTTACGAGATCTCCTCCTTCACGGAGTCTAAGGCCCGGAAGCACATAAGGGAGGCAGGAGCAGAGTTTGTTCTTCATAATGCCCGTCAGTTGAGTCGGGTTTACCCTAGTGGTTTGAGAACCGACTCCTCCAACTTTAACCCACAGGACTTGTGGAATGCAGGGTGCCAAATTGTTGCTCTAAACTTTCAGACAGCAGGGGTTGAGATGGACCTAAATGACGGCTTATTCAATCAAAATGGACGTTGTGGCTACGTATTAAAACCAGCGTTCATGCGCAACTTTGAAGAGATGTTTGACCCCGAAAACCCTCAAAATCGAGAAGATTACAAGCCACTTAGCCTGTCCATACAGGTGATCAGCGGCCAACAGCTTCCAAAAGTAAACATCAAGGAGGGCTCAATCATTGACCCCTTCGTTCGAGTGGAGATTCATGGCGTACCACTGGATCAGGCCAAGCAGGAAACCAGATACATTGACAACAACGGTTTTAACCCGGTATGGTACGACACCCTTCAATTCACCATTCACGCTCCTGAATTGGCACTGGTGCGGTTTGTCGTAGAAGACTATGATAAAACCTCAAAGAACGACTTTGTGGGACAGTTCACTCTCCCTTTCACCTGTATTCAACCAGGATATCGTCACATTCATCTGCTTTCTAAGGATGGCACCAGCATACCTCCTTCCTCGCTTTTTGTTCATATCCGGATTACAAACTTAACCTGAACGCTGAATTTGACACATGCACaaaagaaacagaaaatgcaacaatttcAAGTCTTCCCAGTCAACACTTGTTTGCAGAATTTTCTAAAGTcttaataaatacagtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaataaataaggtaaagTTGTGTTGCTATATATTTAGTTAATCTGTACGCCAAATAATTTTTTAGCTATTTTGCTTGAGACTTGTGTGATCGTATCTAAGTGCACATTTAATAAGATGCATGTTTAGTATAGAAAGTTATACTTTGCATAAAGATAACAAAGCCTATTTTGGTTTACCGTGGATAATTATCACTTAATTTTAGAATTAAATATTATTCAGATATTTGAAATGTAATTCATATAGTTTTAAGATGTACGACAACTCTTTAAATCTTGCTTGGAACACTCCAGTTTTATGGAAATAGGCATTTTACAATGTTCTAGACCTAAACAGTTGGGTTCTACTGGTTTTTAGGTCTggcgggaacacttttagcttagcttagcttagcacaattgatcaaatcagattagaccattagcatcacgctcaaaaaaaaaaaaactttgataattttcctatttaaagcttgacacttctgtagttacattgtgtactaagaccaatgGACAaggaaaagttgctattttctaggctgatatggctaggaactatacccTCATTCCAgcgtaataacaataatatcattgtgcctgctgcagccatgataCAGCAATTAAAGTAATTGATTATTTTACACCAGAGTGTGAGTATTGTTCCTAGACATATAGGTTTAGAAAATAGCAGCTTTGCATTTTCTGTTGATCTTAGTAAATGATGTAATTACTGTAACGTTTTGAAGCCCTTTGGTCATTTTTTGAGCAATACTCTAATGGTCTAAATgaattcagtgatttatgctaggctaagctaaaagtgttcttgCCAGACCCGAACATCGACTGATTGGATTCTAAAATTGTAaatctcaactgtttaactctaaggGAACTGTAAAATGAAACTTTTCCAAAAAGATGTTAGTGTTCCTTTAAGTATTTGAATAAAGTTGCAATGGCTTCTAAGCCGTACAACTCTATTTCAGCAGTACTTACAGTGGTGTGTGTGTTAACTGCTCCTTTGGAATAAAGCACAGAGACAATGGGCACAAGGGCTCAATTACAATCTTACTTTGACCCCGAAGCACCTCAGGGGCCAGACTCAGTTACAAGAAGAGACAGAAGGAGGGCAGTGAAAACGACCGTGTCTGATCCCACCTCCACCTACCTGGATACAGTACACCACAGTAtaccatttaaaatacatacactcATTAATGCATCACCATTCACATAGACTGTATTAGAATGTACTGAATCGTGTCGAGTCATTTGTTAAATCAAATGTATGCTGCTGGACCAATAgtgttatatttttgtatttctaaGCTGAGCCGGATCTGTACTTTTTGTAACATTGCTAAGTAGCTCTGTCTGTTTTGCttgtgtatatataatgtatgtatttgtttaagCATTTGCcatattcattaataaataaagatcaTTTTGAAAGGACTTACTATGTCATTTGGTGACCCTGATTATTGTTTATGCCAATGAGAAAGAACTAACTATTGAATGGGTTTCTGATTTGTT
>TCONS_00041260
GTATCCAGGCTGATGATGACCTGAAGTCCATGATTGTTGGCACAGTGATGAGAAAAATCAAGTCTCGCACATGGAAAAAGCAGCGTTACTTCAGGCTACAAGAagactgcatgactatctggtaCCAGAGCAAGAAAGCAGGAAATGCCCACTCCACCTtTTCTGTGGGTGATGTTGAGGCTGTACGGGAAGGGCACCAATCAGAGGTTCTACTCAGCATTGCCGACGAGTTTCCTCCTGACCGGTGCTTCACCCTTGTGTTTCGTGGACGAAGAGGCAACTTGGACCTAGTGGCCGAATCCACAAAGGAGGCACAATCATGGATAAAAGGGATACGCAAACTCATCGATAACCTAGAGAACATGGGGCAGAGAGAGAAACTGGACCAATGGATCTGTGACTGGTTTAAAAAGGCAGACAAAAACCGAGACGGACGGATGAACTTTAAGGAGGTCAGAGATCTGTTGAAGATGATGAACGTGGACATGAACGAGCACCACGCTCTCCGTCTCTTCACGATGGCGGATCGGTCTCAGTCGGGAACACTCGAGGATGATGAGTTTGTGTTGTTTTATAAGATGCTGACTCAGCGCGAGGACATCCTGCGAGTGTTTCAGGAATATTCAGCCGATGGACAGAAGCTAACGCTCAAAGATCTGAAAGATTTCTTGCAGGAGGAACAGTTACATGAGGACGGAGTTCAACAATACGCACTTAATCTCATTGAACGCTTTGAACCATCTGACACGGCGAAAATGTTACAAGCAATGACGTTTGATGGTTTCCTAATGTACCTGAGCTCATCAGAGGGCTCCATCTTCAACCCTGCAATGCTCGAACTCTACCAAGACATGTCTCAGCCTCTCTGCCATTATTTCATATCATCTTCTCATAACACATACCTACTGGAGGACCAAATCAGAGGACTTAGCAGTGTGGAAGGCTATATACGAGCACTGAAACGTGGCTGTCGATGTGTGGAAGTGGACTGTTGGGATGGACCAAATGGAGAGCCAATTGTCTATCATGGGCACACATTCACATCCAAGATCTTCTTCAAGGATGTTGTCACTGTGCTGGGCAACTATTCTTTTAAAGCATCAGAGTACCCTGTCATCCTGTccattgagaaccactgcagtgTAGAGCAGCAGAAAATCATGGCCCAACACCTCACCCAGATCCTGGGAGACAAGCTGCTGAAAAGCACTTTAGATGGAAAGATTCCCCTCGGCCTCCCGTCCCCTGAGATTCTGTTGAAAGGAAAGAAGATAGGTGGATTAGAGGATGGCATGAATGGAGTAGTGGATGACCCTTTGATGGGAGAGGTGAGCGACGAAGAGGAGGCCACTGAAATTGAGGATGAAAATCATCGCAACAACAGCATACGACACAGAAGCAAGAAATCCAAACAGCGGCTGTCTAAAGAGCTGTCCGACTGTGTGGTTTACTGCAAGAGTGTCCACTTTAGCAGCTTTAAACATTCACGAAATCACTCCAAGTTTTACGAGATCTCCTCCTTCACGGAGTCTAAGGCCCGGAAGCACATAAGGGAGGCAGGAGCAGAGTTTGTTCTTCATAATGCCCGTCAGTTGAGTCGGGTTTACCCTAGTGGTTTGAGAACCGACTCCTCCAACTTTAACCCACAGGACTTGTGGAATGCAGGGTGCCAAATTGTTGCTCTAAACTTTCAGACAGCAGGGGTTGAGATGGACCTAAATGACGGCTTATTCAATCAAAATGGACGTTGTGGCTACGTATTAAAACCAGCGTTCATGCGCAACTTTGAAGAGATGTTTGACCCCGAAAACCCTCAAAATCGAGAAGATTACAAGCCACTTAGCCTGTCCATACAGGTGATCAGCGGCCAACAGCTTCCAAAAGTAAACATCAAGGAGGGCTCAATCATTGACCCCTTCGTTCGAGTGGAGATTCATGGCGTACCACTGGATCAGGCCAAGCAGGAAACCAGATACATTGACAACAACGGTTTTAACCCGGTATGGTACGACACCCTTCAATTCACCATTCACGCTCCTGAATTGGCACTGGTGCGGTTTGTCGTAGAAGACTATGATAAAACCTCAAAGAACGACTTTGTGGGACAGTTCACTCTCCCTTTCACCTGTATTCAACCAGGATATCGTCACATTCATCTGCTTTCTAAGGATGGCACCAGCATACCTCCTTCCTCGCTTTTTGTTCATATCCGGATTACAAACTTAACCTGA

Function

symbol description
plcd4a Enables GTPase activator activity and GTPase binding activity. Acts upstream of or within Wnt signaling pathway, calcium modulating pathway; positive regulation of epiboly involved in gastrulation with mouth forming second; and regulation of convergent extension involved in axis elongation. Is extrinsic component of plasma membrane. Orthologous to human PLCD4 (phospholipase C delta 4).

GO:

id name namespace
GO:1901232 regulation of convergent extension involved in axis elongation biological_process
GO:0006629 lipid metabolic process biological_process
GO:0007223 Wnt signaling pathway, calcium modulating pathway biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0007340 acrosome reaction biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:1904088 positive regulation of epiboly involved in gastrulation with mouth forming second biological_process
GO:0046488 phosphatidylinositol metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0016042 lipid catabolic process biological_process
GO:0019897 extrinsic component of plasma membrane cellular_component
GO:0030695 GTPase regulator activity molecular_function
GO:0005096 GTPase activator activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0005515 protein binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004629 phospholipase C activity molecular_function
GO:0051020 GTPase binding molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-654 Enables GTPase activator activity and GTPase binding activity. Acts upstream of or within Wnt signaling pathway, calcium modulating pathway; positive regulation of epiboly involved in gastrulation with mouth forming second; and regulation of convergent extension involved in axis elongation. Is extrinsic component of plasma membrane. Orthologous to human PLCD4 (phospholipase C delta 4).

Ensembl:

ensembl_id ENSDARG00000057975

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041259 False 4009 mRNA 0.41 15 12729329 12746539
TCONS_00041260 True 2231 mRNA 0.47 14 12731038 12745589

Neighbor

gene id symbol gene type direction distance location
XLOC_020972 CR847870.3 coding downstream 2773 12699121 ~ 12726556 (-)
XLOC_020971 adarb1a coding downstream 35492 12641580 ~ 12693837 (-)
XLOC_020970 cep70 coding downstream 103122 12604302 ~ 12626207 (-)
XLOC_020969 CR847870.5 coding downstream 144375 12584839 ~ 12584954 (-)
XLOC_020968 zranb3 coding downstream 391548 12217920 ~ 12337781 (-)
XLOC_020974 cnot9 coding upstream 5747 12752286 ~ 12763350 (-)
XLOC_020975 NA coding upstream 31350 12777889 ~ 12786441 (-)
XLOC_020976 glsa coding upstream 85136 12831675 ~ 12862415 (-)
XLOC_020977 nab1a coding upstream 123736 12870275 ~ 12890921 (-)
XLOC_020978 mfsd6a coding upstream 164697 12911236 ~ 12925741 (-)
XLOC_020962 NA non-coding downstream 1030654 11697272 ~ 11698675 (-)
XLOC_020961 NA non-coding downstream 1054908 11672189 ~ 11674421 (-)
XLOC_020951 NA non-coding downstream 1625058 11102905 ~ 11104271 (-)
XLOC_020979 NA non-coding upstream 186751 12933290 ~ 12940709 (-)
XLOC_020980 NA non-coding upstream 203281 12949820 ~ 12950292 (-)
XLOC_020981 NA non-coding upstream 211683 12958222 ~ 12964877 (-)
XLOC_020984 BX908726.1 non-coding upstream 355197 13101736 ~ 13112322 (-)

Expression


Co-expression Network