XLOC_020982 (ahr1b)


Basic Information

Item Value
gene id XLOC_020982
gene name ahr1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 12979213 ~ 13042992 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041268
CTCGGCCAAAAATGAATTAGACACGAAGCTGGAACAAATTATGACGCGGGATTTggtttatttgtgtaaatataaCGTGTAATGTATTATTCTAGCCAAACATTTGACTTTGGAGGCTTGTTTACAAACTCATCAGCACTGTTGGGGACGAATAAGATGAAGAGGATTTCTTGTCACTTCTTATCAATgctaaaatatatttgaagagGAATTACACTCTTTGCGTTTCCTTTTATGTGATATTGAGATTTTGGGTGCCTTTTTTGCACaatttatacaatattatatttattataagcattttttcaagtataattattattttaacactaACGACCTGCGCATGAAAtcagattttatttgtttacgGGGTTGTTTTGCTTAATTTAGAAGGATTTCTGTTTCTGATAATTTGTTATAATTAATTTCACCTGAAGACTTGGACTCCTCATATTGACGCCTTAAACATGTACGCGGGACGAAAAAGAAGAAAACCGGTGCAAAGGACGGTGAAGCAGCCTCCAGCTGAAGGGGTGAAGTCGAACCCGTCCAAACGGCATCGAGATCGGTTAAACTCTGAGTTGGACCGGTTGTCTAGTCTTCTTCCATTTCCAGAGGAGGTGACGAGCAGCTTGGACAAACTCTCCATTCTGCGCCTGAGTGTCAGTTACCTGCGCGCCAAGAACTTCTTCTCTGTCACTCTGAAAAACCACAACTGCAATGGTTTGTCGTCAAACAACAGTAACCACGACAACAGTAAAGCAACAGGATTGGTTGACGGCTGTCTGCGAGAGGGAGAGCTCCTGCTACAgGCTCTTAATGGCTTTGTGTTGGTGGTCACAGCCGAGGGGATCATTTTCTACTGTTCTCACACTATTCAGGATTACTTAGGATTTCACCAGACGGATGTAATGCATCAAAATGTGTTTGAACTCATTCATACTGAGGACCAGCAGGCCTTCAGGCGCAATTTACACTGGGCCTTGAACCCGCCGCCAGCCAGCACGCAGACAGAAGACTCATCAGAAGATGGAGATCCTGCCCCAAATATGTCTCTTGTGTTGTGCAACCCAGACCAGCTGCCTCCCGAAAACTCTTCTTTCCTGGAAAGAAACTTTGTGTGTCGTTTCCGATGCCTCCTAGACAATTCCTCAGGATTCCTGGCTTTGAATTTTCAAGGACGTCTGAAATTCCTGCATGGGCAAAACAGGCGATTGGATGATGGAGGCCAAATGCCACCCCAGCTTGCCCTGTTTGCCATTGCGACGCCCCTACAGCCTCCTTCCATAATGGAGATTCGAACCAAGAACATGATATTCAGAACCAAACACAAGTTGGATTTCACCCCAATGGCCTGCGATGCAAAGGGTAAAATAGTTCTTGGCTACACAGAGGCGGAACTGCGAGTTCGAGGTTCAGGGTACCAGTTCATCCATGCAGCTGATATGCTCTACTGTGCTGAGAACCATGTCAGGATGATCAAGACTGGAGAGAGTGGTCTGACTGTTTTTAGACTGCTTACAAAGGACAACCGTTGGAAATGGGTACAAGCTAATGCTAGACTTGTCTACAAAAATGGCAAGCCTGACTACATCATTGCCACCCAGAGGCCACTTGTAGAAGAAGAGGGTGGAGAGCACTTGAGGAAACGATCTATGCATCTTCCATTCACCTTTGCTACTGGAGAAGCTCTGCTGTACCAAATCAACTACCCCATGTTGGGCTTCCCCGACACCCTTCAGGACAAAGGCAAGAACAACAAAACCAAAAAGAGCAAGGTGAACAAAAGCTCAAAGGACGATCTGGATCCAAGTTCCTTACTGGGAGCCATGATGAGACAGGACGAGTCTGTTTATGTTTGCCAGCCAGCTATGGAGCCTAGAATGTCATTCCACAGTAGCCTCTTTGGTGAGCAAGGAGAGACTAGCACTTTCTCTTCTTCTGCTGAGAATGAAAGTTGGAATCCAGTGCAGAATGGTGTAACTACAGCCTCCAAACAGGAGACGTCGAGTTTTGACCCACTTTTGGCAACATTAGACTCTCTTTCTTTGGAAAATGAGGAGAGCTGCTCCAACAGTGAGTTATTCAGTGCCCTTGAAAATCTTGGACTCAATGCAGAGGACCTTGAGTTGCTGCTTCTAGATGAAAGGATGATCCAGGTAGAAGTGGAACCGGACTTTATCCCATCTCTCAATGATCTTCTCACAAACAACGAAATCCTCTCCTACGTCCATGATTCACTGGAGAACCAGACTGAGGACCCAGCAGAGTCTCAAAAGCCTTCAACTGCATTAGATTCTGTTGAAAACTCTAAGCCAGAGTCTGATTCACCTCCTCAAGTAACTTCATCCGTACCTGCTCCTTTCTGGCCACAAAAACAGATACCACCCATACTTCATCTATCACAGCGCATGCAACAACATCTTAATGGCCAGTCGGTTTGCCACAAAACTGAGAACTGGATCCATACACCATTGTCTCAAGTGCCTACAACAGAATCTGAGACAGCTAACTTTAACCAGCATGATACTACTTTGGTGAACTCTGTACCAGTTGTACACAATGGACACTGGGTCCCTGAACATACGCAAGTCAATTTAAACTCTCAACTTAGTGATAAGATAACAGGAACTAGTAAGGCACAGCCACAGCAATGGCAGCAAAACCAGTTGCCTGTCCCATTCCAGTGTAAGCCGAAAACAATTGAGGGTGGAGATACCCTTGCAAATGGGATCTACAGTAATCCTCAGTGGCATGGATACAACTTTGCAGAACAGCTGGTCACAAATGGACCTTGTTTTCCCAATGGTCAGATGGCACACACTCAGACAATGGGTACCCATATTATTGATTACAACATGACTGACAATTCAGGGGTGGAGTTTACAATGAACAGCAGTTCATCTGGGAACCTAGGGCAGTTTCAGGGAGCTATGGCATCATCTTCGTCCTATCAGCAGGGTTATcagaaacagcagcagcagccaaAGGTCACACCCACTTATTACGCCTCCTATACCAAACAGAACTCCTCTCTGGAGCATATCCTAGGATTAGCCCCACCTTCAAACCTCCCCTCGCTGACGGATTATGGCTCTGAGTTGACCCATGACATGACCCACAGTAAGATGGAGACCGGTTTTCTTCTGAACTCCACTAGCGTGACCTACAACGGAAGTTGTTTGGTTCCCAATGGCAACACAGTGGCCGCACCTGTCAACAGTCCCCACCCACTTCCTGAGCCACACCCACATCCTCCAGACCCTCAAACCACTGGTTTCTACCTCTGAACATAGTAAAGATCCATCCGAAGAGATGCCATCCATCACGGGAAGACTGTCAAGCATAAAttatggtttgtttttgttttttagtttgttttcttttttcttatcaATTTGAATGGgttttaatttcaattaaatCGACACAGATTGATCTCTGGAATATTTAACCAATTGAAGTCGTTGAATACTGCACCCGGCATAATGTGAGCACTCTCGTTAATATTACTTGCCATTATGTTACGAAATTTCTAAAGTTGGAAGATGCAGTCGATCACAATTTGCGTTGGTCCGTCCATAACAGGTGTGTGTTGGGaaatgtttgtgtatatgtacgtgtgtatgtttgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgagacaattCGTTGGAAATCGTTTGTGAAATACAAGTAGTACAAATTTGTGCTAATTGTTCGGAAAGCTAAATGACGTAAATAACGTCATGCGCAACATATAGAACTGATTGTCCTGAAACGCAGTAAATGATGTTTATATGAACAGAAGATTggattgcatatttatttatgggAAAATGCAAGGTCGCTACCTTCTTTTTACCAACAGTTTAAAGAAAACTGTGCGAGATGTCAGTAATAACACAGATTGCAGTATAAAAAAATTCTGTAGATGTCGCTTGTAGATCTGAACCCTTCTCGCTATTGCATTTTGTGAGATTAGATTTTGTAAAGCTGATTCTAGATCAGCTTTACAAATCAAC

Function

symbol description
ahr1b Enables DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and ligand-activated transcription factor activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated and xenobiotic metabolic process. Predicted to be part of aryl hydrocarbon receptor complex. Predicted to be active in nucleus. Is expressed in eye. Human ortholog(s) of this gene implicated in retinitis pigmentosa 85. Orthologous to human AHR (aryl hydrocarbon receptor).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0006805 xenobiotic metabolic process biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function
GO:0098531 ligand-activated transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050922-1 Enables DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and ligand-activated transcription factor activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated and xenobiotic metabolic process. Predicted to be part of aryl hydrocarbon receptor complex. Predicted to be active in nucleus. Is expressed in eye. Human ortholog(s) of this gene implicated in retinitis pigmentosa 85. Orthologous to human AHR (aryl hydrocarbon receptor).

Ensembl:

ensembl_id ENSDARG00000023537

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041268 True 4032 mRNA 0.44 11 12979213 13042992

Neighbor

gene id symbol gene type direction distance location
XLOC_020981 NA coding downstream 14336 12958222 ~ 12964877 (-)
XLOC_020980 NA coding downstream 28921 12949820 ~ 12950292 (-)
XLOC_020979 NA coding downstream 38504 12933290 ~ 12940709 (-)
XLOC_020978 mfsd6a coding downstream 53472 12911236 ~ 12925741 (-)
XLOC_020977 nab1a coding downstream 88292 12870275 ~ 12890921 (-)
XLOC_020983 ahr2 coding upstream 3278 13046270 ~ 13165186 (-)
XLOC_020984 BX908726.1 coding upstream 58744 13101736 ~ 13112322 (-)
XLOC_020985 NA coding upstream 144869 13187861 ~ 13188332 (-)
XLOC_020986 NA coding upstream 158486 13201478 ~ 13244551 (-)
XLOC_020987 si:ch211-227m13.1 coding upstream 233701 13276693 ~ 13350356 (-)
XLOC_020975 NA non-coding downstream 192772 12777889 ~ 12786441 (-)
XLOC_020972 CR847870.3 non-coding downstream 252657 12699121 ~ 12726556 (-)
XLOC_020988 CU062647.1 non-coding upstream 379576 13422568 ~ 13431304 (-)
XLOC_020990 NA non-coding upstream 563289 13606281 ~ 13607563 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000015_07938405_07978447 AHR1B coding CI01000015 null 7938371 ~ 7979064 (-)