XLOC_021003 (si:ch73-338d8.5)


Basic Information

Item Value
gene id XLOC_021003
gene name si:ch73-338d8.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 14304677 ~ 14309817 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041302
AAAGAAAACCTGTCAAAAacgatttttttaaaacaccaagATGCCCCAAGCAGAAGTCGTTGTAAGCAAAGTGCATGAATATCTAAAAGGAACTGCAGCTTTTACAACTTTTCCATTGAGTCTTCTGTTAATTGGATTGGAGGAGTTGATTGAAGTACAAATTTTTTCATGCCCATGCAAAGTTGAGCTTAATGCCCTGCTTACAGTGGCTATCGCTTTTGGGCCCgctctttttacttttactttaatatTCCTTTTTTTGAGGCCTTTTAAACATGGATGCAGTCGTTGTTGTGGAggagcaaaaaacaaaaatacccaaaactgtccaaaagcatttgccaTTTGTCTGATTCCCCCAGTTGTTTGGCTTTTTGTCTTCCTGCTTGATGGTGAATATGTTGCTTGTGGCATGACAACCTGGAAGGGAGTTTATGTGTTTGATAAGGAGCTCAACAGGTCTTGGTGCAAACCTACTGATATGAGCCGAAATGAGACAGAGCTACGAGAACTGACTCGCTATTTCATTCACCAGTCTCAGTATGCAGGTTATATCTTGGTCTCAGTCTTCAGTTTCTTGGCGATTGTCTTTGTGACTATTTATGACTGCTGCATGAGTGGAAAATGTAACTGGTGCCCAAGTCAACTGCTATCCTGTTGCAGACGAACAGCAGAGGGTAATGAGAGTCAAAACAATACTGAAGCAGACTCAATAGGACAGGAGGATACCTCTTTCACCAGCAGCACTACACAAAATCAAAGAATGCTTCCTCCTAAAGTGCCCATTCGTCCTCATCAGCCTCCAACTAATTGAAAGAAATTTggggcaaaaaaacaaaaaacaaaacaaacatcattAGTTCACCTTTTCTGTCTACGAGTTACATTATATATCAGAAACGTTCATGATT

Function

symbol description
si:ch73-338d8.5 Predicted to enable cation channel activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000105269

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041302 True 911 mRNA 0.40 3 14304677 14309817

Neighbor

gene id symbol gene type direction distance location
XLOC_021002 NA coding downstream 2804 14299800 ~ 14301873 (-)
XLOC_021001 NA coding downstream 6075 14275746 ~ 14298602 (-)
XLOC_021000 si:ch211-246m6.5 coding downstream 31978 14178813 ~ 14272699 (-)
XLOC_020999 si:ch211-246m6.5 coding downstream 143368 14145510 ~ 14161309 (-)
XLOC_020998 si:ch211-246m6.4 coding downstream 175961 14127472 ~ 14128716 (-)
XLOC_021004 NA coding upstream 22633 14332450 ~ 14334135 (-)
XLOC_021005 si:dkeyp-122a9.1 coding upstream 28361 14338178 ~ 14346575 (-)
XLOC_021006 si:dkeyp-122a9.2 coding upstream 41022 14350839 ~ 14361022 (-)
XLOC_021007 lrp1ba coding upstream 54135 14363952 ~ 14739491 (-)
XLOC_021008 CR352252.1 coding upstream 383295 14693112 ~ 14693228 (-)
XLOC_020996 BX649296.1 non-coding downstream 284955 14019604 ~ 14019722 (-)
XLOC_020995 BX649510.1 non-coding downstream 358610 13945953 ~ 13946067 (-)
XLOC_020993 CT990618.1 non-coding downstream 588092 13711434 ~ 13716585 (-)
XLOC_021009 BX936391.1 non-coding upstream 455181 14764998 ~ 14787062 (-)
XLOC_021010 NA non-coding upstream 570998 14880815 ~ 14883529 (-)
XLOC_021012 NA non-coding upstream 761837 15071654 ~ 15209243 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_00168263_00169137 NA coding CI01000030 null 168212 ~ 169181 (-)