G128679


Basic Information

Item Value
gene id G128679
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28568316 ~ 28600609 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU148400
GGACACAACCTCAGAGAGAGCACTGCCGGTTCTGTTGCTAGAGAGCACTGATGCATGTGAGAGAGAGGTTCTAGTCCTCTCTACACTCCCATCTTCAGCCTCTGGAAGGTCCCTCCTCCCCCACACCAACCAATAGGGAGGCAGAGATAGCTTTCATGGTCCAGAGATTGGGTTGGGTAGAGGTGGTGGTATTGCACTGAAatgtaaagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU148400 True 210 lncRNA 0.47 2 28568316 28600609

Neighbor

gene id symbol gene type direction distance location
si:ch73-22o12.1 LOC106605406 coding upstream 98568 28399615 ~ 28469748 (+)
vars1 LOC106605401 coding upstream 212074 28338839 ~ 28356242 (+)
LOC110485753 LOC106605405 coding upstream 229666 28335510 ~ 28338650 (+)
ino80e ino80e coding upstream 233702 28331733 ~ 28334614 (+)
si:dkeyp-77h1.4 LOC106579702 coding upstream 249499 28297202 ~ 28318817 (+)
LOC110485894 LOC106605414 coding downstream 119327 28719936 ~ 28780547 (+)
LOC110485935 LOC106605415 coding downstream 182965 28783574 ~ 28865311 (+)
LOC110485968 LOC106605416 coding downstream 266693 28867302 ~ 28905546 (+)
LOC110485980 LOC106605417 coding downstream 314212 28914821 ~ 28931101 (+)
LOC110485990 LOC106579931 coding downstream 331379 28931988 ~ 28951235 (+)
G128549 NA non-coding upstream 185392 28311826 ~ 28382924 (+)
G128561 NA non-coding upstream 188214 28379782 ~ 28380102 (+)
G128546 NA non-coding upstream 263319 28304484 ~ 28304997 (+)
G128531 NA non-coding upstream 302862 28264194 ~ 28265454 (+)
ddr1 LOC106605397 non-coding upstream 317555 28194562 ~ 28250766 (+)
G128719 NA non-coding downstream 32987 28633596 ~ 28634986 (+)
G128640 NA non-coding downstream 87644 28688253 ~ 28689570 (+)
G128741 LOC106584099 non-coding downstream 89486 28690095 ~ 28690399 (+)
G128745 NA non-coding downstream 92343 28692952 ~ 28693246 (+)
G128746 NA non-coding downstream 92737 28693346 ~ 28693605 (+)
G128490 NA other upstream 20401 28250842 ~ 28547915 (+)
G128436 NA other upstream 478871 28088647 ~ 28089445 (+)
G128185 NA other upstream 851153 27716482 ~ 27717163 (+)
LOC110485466 LOC106605529 other upstream 1264761 27288172 ~ 27303644 (+)
G127644 LOC106605534 other upstream 1377723 27189991 ~ 27190593 (+)
G128853 LOC106605419 other downstream 339290 28939899 ~ 28981288 (+)
LOC110534631 LOC106580029 other downstream 877008 29424822 ~ 29478401 (+)
G129155 NA other downstream 884024 29484633 ~ 29485130 (+)
G130308 NA other downstream 999417 29600026 ~ 29641096 (+)

Expression


Co-expression Network