G131279 (LOC106605477)


Basic Information

Item Value
gene id G131279
gene name LOC106605477
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30557566 ~ 30572768 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU151250
aaaaaaaacaccgtGTTTATTTTAAGACACCAAAAGGCCTGAATACTCAGGAACATTAGGAAATACTTCGTTGCGAAGTGGTCATGGTAAATAACTTGACAGACAATTGGAAAATGATAAACACAAATCCGCATTGGAATTATAAGGTTAAGCACAAGTGTCCCAtcattataaaaaaaatacaccGCCCCCAGACAGTTCGAAGAGACATTTAGTCAACCATTTGAAATGTCGCCTGACTCCGGCTCTTACACGGTTTTGGTAGCTCGTTGTTGATCCCGTTCCTTCTTTGTAAAGGAAATACAAAGCTGCCGTCAGTGTTGGGTTGCTAGGGACGTTTGGAATTCATCCTGGCATGAGTGTGGCGCTAGCCTAGCATGCTAACTAGTAACGTAAGACCTTTGATTTGAATCGTTTCAAATTTAACGGACAAATACAAAACAGGCAATACTGGCGGCCTGAGATTACGATTTGTAAACTAGGTCAACGTAAAGCGTTCACTTGGTTTACATAACTAGCTACAAACTAAGCCAGCGAGTAGTGAAAAGGAGAGTCCCAACCCAtaaacaaaaatctaaatgaaCCATCAAAAGGTGGAGTTTCAAACATGGCTAACGTTAATTGGCTAAATGAAAACCCTAAATTAGCGTTCACAAATTAGACATACTAACGTTACCACCATGACATATTTAATCGTtaaacatgtatagtataacgtTATAGCTGGCTAGGTCAGCAAAATAGTATTTTCGTTTTGTCCGTAACATCTCGATAATGAATACATTGTCCGCATCATCAGCATTACAGATTGTCCGAAAGATCTCCACACTCCGTCGTAGAGAACTGCAGCCGCCTGACCGCTTCTTTGATTAGATTCCCAGACAATATTAATTCCTGAAGTAACTGATGTGGGTCGTCGTTCTCGACAGCTGCGCTGATCCTCTTTCGGTTCCAAGGTTTGAAATTGTCCCACTCCTGGTTACTTGAGCCAGGGAAGCTGTATGGACTAGCTCTGTTACTACGTTGCCCCCGGTTTCGAAGCCGTATGCAGCACCCGGTTCGTTTTTGCTGGGCCACgccattgttgttgttgttagctTGTTTGATGTTGCTACTGCTGCAGTTGCCGTTGAGACCGTGGAGACACGACATCGTCTTTTGATTAGCACTATTGTTGTGAAGCTGCAGCGCCTCGCCGATTTTCGTGACCAAAGCGTCCACTTCTTTCGAATCGACGGTAACAGACTGCTCCAAGAGGATGTAGTTCTCCTTTCGACAAGGCATTTTGTTGTATTTTGTGTGTTTCTCAGCTGTATTTTCGAAATGAATGGGAGCGTAGCTCAGTTCCTTCCTCTCACCACGTTGCTCGGCAGAAAAGCCCTGTACTCTGC

Function

NR:

description
GSK-3-binding protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151250 True 1391 lncRNA 0.42 2 30557566 30572768

Neighbor

gene id symbol gene type direction distance location
LOC110486681 LOC106580557 coding upstream 14993 30532828 ~ 30542573 (+)
LOC110486625 LOC106605474 coding upstream 27220 30518443 ~ 30530346 (+)
LOC110534660 LOC106605472 coding upstream 52447 30485372 ~ 30505119 (+)
decr1 decr1 coding upstream 197871 30352768 ~ 30359695 (+)
LOC110486570 LOC106580396 coding upstream 207596 30326490 ~ 30349970 (+)
si:dkey-22o22.2 LOC106605377 coding downstream 45235 30618003 ~ 30746151 (+)
LOC110486724 LOC106581338 coding downstream 226012 30798780 ~ 30807966 (+)
plekhf2 plekhf2 coding downstream 249008 30821776 ~ 30844299 (+)
LOC110534679 LOC106605381 coding downstream 278529 30851297 ~ 30856046 (+)
LOC110534689 LOC106605368 coding downstream 300965 30873733 ~ 30891386 (+)
G131315 NA non-coding upstream 9118 30548235 ~ 30548448 (+)
G131304 NA non-coding upstream 25541 30531809 ~ 30532025 (+)
G131295 NA non-coding upstream 69601 30487745 ~ 30487965 (+)
G131293 NA non-coding upstream 70627 30486700 ~ 30486939 (+)
G131406 NA non-coding downstream 8204 30580972 ~ 30581270 (+)
G131416 NA non-coding downstream 17145 30589913 ~ 30590180 (+)
G131421 NA non-coding downstream 19897 30592665 ~ 30593696 (+)
G131424 NA non-coding downstream 22469 30595237 ~ 30595437 (+)
G131448 NA non-coding downstream 37923 30610691 ~ 30610920 (+)
G130414 NA other upstream 767735 29789576 ~ 29789831 (+)
LOC110486279 LOC106605442 other upstream 863715 29685855 ~ 29697686 (+)
G130308 NA other upstream 916470 29600026 ~ 29641096 (+)
G129155 NA other upstream 1072436 29484633 ~ 29485130 (+)
LOC110534631 LOC106580029 other upstream 1079436 29424822 ~ 29478401 (+)
G131491 NA other downstream 127414 30700182 ~ 30700623 (+)
G131517 ccne2 other downstream 175287 30748055 ~ 30749954 (+)
LOC110534710 LOC106605356 other downstream 718702 31262054 ~ 31294577 (+)
eaf1 LOC106581241 other downstream 787668 31360408 ~ 31366322 (+)
G132342 LOC100136303 other downstream 1284880 31834170 ~ 31887572 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_00251025_00251471 GBP coding CI01000016 null 250218 ~ 251486 (-)
grasscarp (Ctenopharyngodon idella) G149522 NA non-coding CI01000028 null 6916043 ~ 6916282 (-)
tiger barb (Puntius tetrazona) G115020 gbp,LOC107666878,LOC107717378,LOC107600509,LOC107668283,LOC107713814 non-coding NC_056714.1 CM032083.1 21167994 ~ 21169353 (+)