G131540


Basic Information

Item Value
gene id G131540
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30860556 ~ 30861094 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU151538
ttgagaccgtgtctgtgccttgacctaggttgggcaaaactaaacatggcggtgtttgccttagcaatctcactaggataaagacctcctccattcctgtcattattgaaagagatcatgatacctcacatctcaaaatagggctacttaatgttagatcccttacttcaaaggcaattatagtcaatgaactaatcactgatcataatcttgatgtgattggcctgactgaaacatggcttaagcctgatgaatttactgtgttaaatgaggcctcacctcctggctacactagtgaccatatcccccgtgcatcccgcaaaggcggaggtgttgctaacatttacgatagcaaattgcaatttacaaaaaaaaaatgcttttttcGTCTTTTGatcttctagtcatgaaatctatgcagcctactcaatcactttttatagctactgtttacaggcctcctgggccatatacagcgttcctcattgagttccctgaattcctatcggaccttgtagtcatagcagataatattctaa

Function

NR:

description
ORF2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151538 True 539 lncRNA 0.45 1 30860556 30861094

Neighbor

gene id symbol gene type direction distance location
LOC110534679 LOC106605381 coding upstream 4510 30851297 ~ 30856046 (+)
plekhf2 plekhf2 coding upstream 16257 30821776 ~ 30844299 (+)
LOC110486724 LOC106581338 coding upstream 52590 30798780 ~ 30807966 (+)
si:dkey-22o22.2 LOC106605377 coding upstream 114405 30618003 ~ 30746151 (+)
LOC110486681 LOC106580557 coding upstream 317983 30532828 ~ 30542573 (+)
LOC110534689 LOC106605368 coding downstream 12639 30873733 ~ 30891386 (+)
LOC110486784 NA coding downstream 275714 31136808 ~ 31146454 (+)
sri sorcn coding downstream 338241 31199335 ~ 31202392 (+)
LOC110486889 NA coding downstream 347891 31208985 ~ 31222079 (+)
mxtx2 NA coding downstream 395423 31255824 ~ 31261130 (+)
G131527 NA non-coding upstream 45223 30814506 ~ 30815333 (+)
G131502 NA non-coding upstream 98642 30747628 ~ 30761914 (+)
G131494 NA non-coding upstream 150835 30709496 ~ 30709721 (+)
G131493 NA non-coding upstream 151072 30708874 ~ 30709484 (+)
G131448 NA non-coding upstream 249636 30610691 ~ 30610920 (+)
G131556 NA non-coding downstream 41710 30902804 ~ 30908231 (+)
G131719 NA non-coding downstream 194966 31056060 ~ 31056286 (+)
G131720 NA non-coding downstream 238106 31099200 ~ 31099445 (+)
G131721 NA non-coding downstream 239654 31100748 ~ 31100965 (+)
G131731 LOC100136479 non-coding downstream 245747 31106841 ~ 31175978 (+)
G131517 ccne2 other upstream 110602 30748055 ~ 30749954 (+)
G131491 NA other upstream 159933 30700182 ~ 30700623 (+)
G130414 NA other upstream 1070725 29789576 ~ 29789831 (+)
LOC110486279 LOC106605442 other upstream 1166705 29685855 ~ 29697686 (+)
G130308 NA other upstream 1219460 29600026 ~ 29641096 (+)
LOC110534710 LOC106605356 other downstream 430376 31262054 ~ 31294577 (+)
eaf1 LOC106581241 other downstream 499342 31360408 ~ 31366322 (+)
G132342 LOC100136303 other downstream 996554 31834170 ~ 31887572 (+)
G133473 LOC106605294 other downstream 2306344 33167438 ~ 33169378 (+)
G133663 LOC106605282 other downstream 2635360 33496454 ~ 33497285 (+)

Expression


Co-expression Network