G133857


Basic Information

Item Value
gene id G133857
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33816169 ~ 33816474 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU154141
TCTTCACATAGCCCTGGATGAGCTCAGGGGTGGGCACCTGGTCAGTAGACAGACACTGCTCCAGCTGCAGACAGTAGGGAGCACAGTTTGACTGGCTCTTCTCCAACCTGCGGTAGCAGCCCACACAGCAAGGGAGAGAGGAACAACACATTTCAGCCACAGTCACTTCAGTCATACACGATACAGACATACACCACATTCTGTAATACATCTCTGAAATGGTTGCACAGAGAAATCTTTGGAAATGAAGTATTTATGGATTTATGAAAATAATGTATTAATAAATCACATATGAGCCGTGTTAAT

Function

NR:

description
raftlin isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU154141 True 306 lncRNA 0.44 1 33816169 33816474

Neighbor

gene id symbol gene type direction distance location
LOC110487876 NA coding upstream 57377 33749647 ~ 33758792 (+)
tap1 tap1 coding upstream 69728 33733444 ~ 33746441 (+)
LOC110487856 LOC106581981 coding upstream 89931 33719833 ~ 33726238 (+)
LOC110487797 LOC106605278 coding upstream 121228 33668143 ~ 33694941 (+)
LOC118939517 NA coding upstream 275474 33531590 ~ 33540695 (+)
LOC110487915 LOC106582023 coding downstream 57431 33873905 ~ 33880108 (+)
LOC110487926 LOC106605271 coding downstream 71365 33887839 ~ 33945400 (+)
LOC118939520 NA coding downstream 348212 34164350 ~ 34169250 (+)
LOC110488005 rab5a coding downstream 360569 34177043 ~ 34185964 (+)
ube2e2 LOC106582102 coding downstream 469976 34279641 ~ 34317474 (+)
G133856 NA non-coding upstream 1324 33814628 ~ 33814845 (+)
G133855 NA non-coding upstream 3247 33812639 ~ 33812922 (+)
G133854 NA non-coding upstream 6270 33809604 ~ 33809899 (+)
G133852 NA non-coding upstream 8512 33807334 ~ 33807657 (+)
G133847 NA non-coding upstream 14012 33801954 ~ 33802157 (+)
G133876 NA non-coding downstream 23439 33839913 ~ 33840161 (+)
G133878 NA non-coding downstream 24409 33840883 ~ 33841107 (+)
G133884 NA non-coding downstream 31864 33848338 ~ 33848552 (+)
G133886 NA non-coding downstream 33516 33849990 ~ 33850809 (+)
G133895 NA non-coding downstream 51017 33867491 ~ 33867993 (+)
G133760 LOC106605274 other upstream 1686 33814033 ~ 33814483 (+)
G133663 LOC106605282 other upstream 318884 33496454 ~ 33497285 (+)
G133473 LOC106605294 other upstream 646791 33167438 ~ 33169378 (+)
G132342 LOC100136303 other upstream 1928597 31834170 ~ 31887572 (+)
eaf1 LOC106581241 other upstream 2449847 31360408 ~ 31366322 (+)
G134735 LOC100136012 other downstream 145943 33962417 ~ 33962658 (+)
si:dkey-30e9.6 LOC106605205 other downstream 871481 34687955 ~ 34692286 (+)
G135916 NA other downstream 1155166 34971640 ~ 34971931 (+)
G135920 LOC106605214 other downstream 1155975 34972449 ~ 34972801 (+)
LOC110488281 apom other downstream 1168498 34984948 ~ 35000555 (+)

Expression


Co-expression Network