G133896


Basic Information

Item Value
gene id G133896
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33868445 ~ 33871942 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU154187
GATTAGAACAGGACTGTGCATTTTTGTGTTTTTTCCCCTTTTGTACTGTAATTGTGTTTTAATTTTACACATTTGGAACCAAAGGCCACGTATGTTGTGTTTTGTTATTGATCACTGGCAGCAATTTCATGTTGCTAATAAAGATTTTACTGCAGCAATTCTGTCACTTAATATTTTTTTCTACTCTACGTTCGATAAAGTAAAGATGACTCATTCACTTTTAGATAGTATGTTGCCAAAAATGCACACATTCAACACTCAACCAAAAAATGTAGTGGTTTACAGTAAAAGGAAACTGAATTATGAAACACTATGGATTTCGTATTGTCTATTGTATGCAGGTAGAACTGAAACATGAAAAGTAATGCAGTTTTTGTAATGCCATCAACTGTTAGTATTTTTGAAAGTCGCTGTGCTATGATTTCCTATATGTTCCTCTTGGATAGAAAACATGCGTAAGTGTTTTGACAATGATTAGATATTGAGTCAGGTTTGCCGTGTTATGATAGAGTTAGTGTACGTAGAGAAAGTTTTTTGTATTTTAAAATGGAGAGTTGGTGTTTAAGGAACAAAATGTGGTTTTGAGCAGAAAATGTACTATTTGGCTAATTGTGTGATGTTGCTGTGTTAAGACATTAGAAAAAGTATCTTACGTATAAGTAAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU154187 True 666 lncRNA 0.33 2 33868445 33871942

Neighbor

gene id symbol gene type direction distance location
LOC110487876 NA coding upstream 109653 33749647 ~ 33758792 (+)
tap1 tap1 coding upstream 122004 33733444 ~ 33746441 (+)
LOC110487856 LOC106581981 coding upstream 142207 33719833 ~ 33726238 (+)
LOC110487797 LOC106605278 coding upstream 173504 33668143 ~ 33694941 (+)
LOC118939517 NA coding upstream 327750 33531590 ~ 33540695 (+)
LOC110487915 LOC106582023 coding downstream 1963 33873905 ~ 33880108 (+)
LOC110487926 LOC106605271 coding downstream 15897 33887839 ~ 33945400 (+)
LOC118939520 NA coding downstream 292744 34164350 ~ 34169250 (+)
LOC110488005 rab5a coding downstream 305101 34177043 ~ 34185964 (+)
ube2e2 LOC106582102 coding downstream 414508 34279641 ~ 34317474 (+)
G133895 NA non-coding upstream 452 33867491 ~ 33867993 (+)
G133886 NA non-coding upstream 17636 33849990 ~ 33850809 (+)
G133884 NA non-coding upstream 19893 33848338 ~ 33848552 (+)
G133878 NA non-coding upstream 27338 33840883 ~ 33841107 (+)
G133876 NA non-coding upstream 28284 33839913 ~ 33840161 (+)
G134764 NA non-coding downstream 112280 33984222 ~ 33984490 (+)
G134832 NA non-coding downstream 156509 34028451 ~ 34028684 (+)
G134835 NA non-coding downstream 158251 34030193 ~ 34030403 (+)
G134871 NA non-coding downstream 178985 34050927 ~ 34051219 (+)
G134898 NA non-coding downstream 201102 34073044 ~ 34073262 (+)
G133760 LOC106605274 other upstream 53962 33814033 ~ 33814483 (+)
G133663 LOC106605282 other upstream 371160 33496454 ~ 33497285 (+)
G133473 LOC106605294 other upstream 699067 33167438 ~ 33169378 (+)
G132342 LOC100136303 other upstream 1980873 31834170 ~ 31887572 (+)
eaf1 LOC106581241 other upstream 2502123 31360408 ~ 31366322 (+)
G134735 LOC100136012 other downstream 90475 33962417 ~ 33962658 (+)
si:dkey-30e9.6 LOC106605205 other downstream 816013 34687955 ~ 34692286 (+)
G135916 NA other downstream 1099698 34971640 ~ 34971931 (+)
G135920 LOC106605214 other downstream 1100507 34972449 ~ 34972801 (+)
LOC110488281 apom other downstream 1113030 34984948 ~ 35000555 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G149483 NA non-coding NC_056720.1 CM032089.1 4105675 ~ 4106083 (-)