G206742 (LOC106561643)


Basic Information

Item Value
gene id G206742
gene name LOC106561643
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94312424 ~ 94312774 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU234006
CGAAGAGGCTCTGTGGTTCAGGGGTCATGGGCCAGTCGGGTCCCCCTCTAGGCGTGTTTGGGAAGGGGGGCAGGCCAGACGGGATAGGGTTGGGTTGTCTGAAGTTACTGTTGTCTGAGAACAGCGACTGGGACTCTGCAGCAGCTCCCTCGAAGGGAGAGCGGGCGGTGAGATCCACTACACTGATAGGAACCACCAGACTGCTCGGGGGTCTGGTCAGCcccggaggagaggagggggactcACTGTTAGGCAtctggagagggggggggggggacattggTAATGTCTGTGACAATGTAACATTTGTAAGAAATAAATCAGCTATATTTGAAATGGCCCAGAAGAAAC
>TU234005
CGAAGAGGCTCTGTGGTTCAGGGGTCATGGGCCAGTCGGGTCCCCCTCTAGGCGTGTTTGGGAAGGGGGGCAGGCCAGACGGGATAGGGTTGGGTTGTCTGAAGTTACTGTTGTCTGAGAACAGCGACTGGGACTCTGCAGCAGCTCCCTCGAAGGGAGAGCGGGCGGTGAGATCCACTACACTGATAGGAACCACCAGACTGCTCGGGGGTCTGGTCAGCcccggaggagaggagggggactcACTG

Function

NR:

description
CCR4-NOT transcription complex subunit 4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234006 False 351 TUCP 0.52 1 94312424 94312774
TU234005 True 248 TUCP 0.43 1 94312527 94312774

Neighbor

gene id symbol gene type direction distance location
LOC110500075 LOC106561651 coding downstream 53591 94251418 ~ 94258833 (-)
LOC110500060 tnni3 coding downstream 68858 94232734 ~ 94243566 (-)
LOC110500065 LOC106561650 coding downstream 82879 94222366 ~ 94229545 (-)
LOC110500043 LOC106561646 coding downstream 91278 94184199 ~ 94221146 (-)
LOC110500013 LOC106561647 coding downstream 131982 94171881 ~ 94180442 (-)
LOC110500125 LOC106561674 coding upstream 35744 94348518 ~ 94359922 (-)
LOC110500132 LOC106561675 coding upstream 51241 94364015 ~ 94367194 (-)
LOC110500153 LOC106561673 coding upstream 99470 94412244 ~ 94417008 (-)
LOC110500221 LOC106561669 coding upstream 213774 94526548 ~ 94529608 (-)
asb13b LOC106561665 coding upstream 291270 94604044 ~ 94611792 (-)
G206741 NA non-coding downstream 254 94311888 ~ 94312170 (-)
G206738 LOC106561643 non-coding downstream 3232 94308970 ~ 94309192 (-)
G206737 NA non-coding downstream 3917 94308154 ~ 94308507 (-)
G206725 NA non-coding downstream 21137 94284127 ~ 94291287 (-)
G206722 NA non-coding downstream 38968 94273132 ~ 94273456 (-)
G206745 LOC106561643 non-coding upstream 1566 94314340 ~ 94314585 (-)
G206743 LOC106561643 non-coding upstream 2292 94315066 ~ 94317648 (-)
G206748 NA non-coding upstream 8948 94321722 ~ 94322292 (-)
G206751 NA non-coding upstream 16327 94329101 ~ 94329351 (-)
G206756 NA non-coding upstream 25256 94338030 ~ 94338266 (-)
G205192 NA other downstream 1349490 92962044 ~ 92962934 (-)
LOC110499897 LOC106573100 other downstream 1872823 92398054 ~ 92443838 (-)
G204024 NA other downstream 2524321 91787187 ~ 91788103 (-)
G203915 rassf9 other downstream 2721375 91589212 ~ 91591049 (-)
G202279 NA other downstream 3870999 90377557 ~ 90441425 (-)
G206744 LOC106561643 other upstream 616 94313390 ~ 94313918 (-)
G206750 NA other upstream 15136 94327910 ~ 94328183 (-)
G207244 LOC100194703 other upstream 304141 94616915 ~ 94617232 (-)
G207249 NA other upstream 316663 94629437 ~ 94629739 (-)
G207340 LOC105021815 other upstream 449888 94762662 ~ 94776356 (-)

Expression


Co-expression Network