G207340 (LOC105021815)


Basic Information

Item Value
gene id G207340
gene name LOC105021815
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94762662 ~ 94776356 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU234689
GAAAATGTAAGTACTCACTACGtataaattgctctggataacaatgtctgctaaatgaccacaatgtaattttttttatcatatcCAATAACCTCAATCAACCATATGGGCTGACAAGAGACTAGTTGACACACAGGATCGAAACAATATTGGTAATTGGTGTGTGGCCTGAGACCCACCCTCCTTCTGGCTCCCGCCGGCTGCACCCTGCAGCAGGGACTGGCTGTAGAGGGAAGGCAGGGCGGACGCAGTGTACTGCTGCATCCCTGAGTAAGCCTGGGTCAGGGCATCCATGGAACTCGCTCCAGAGCCATTAGCCATCGAGGCCCCCAGGCCCCCGTTCATAGCAGCCATACCTAACATGAGGGCATACTCACCGCTGACCCCCCCAGTGAGGGCGTTGAGGTTGTTGAGGCCCATGGAGGCGCCCGTCAGACCGCCGCCAAGGCCCTGGGTCAGTCCCAGAGAGGCCAGGGTGTTCATGGCTGCACCCGCGCTGGAACCTGCCGTCTGG
>TU234690
TTCGTATATAACCAACAATACAAAAAAAGCAAGTTGGCGAGAGAGAAGTTTGTGGTAAGCCATAAAACATTGATCTATGCATTTTAGAATTGGAGCAACAAATTATTTTACGATGGCCATCTCCTTGCTCATGTTTAGGGGGTAGAAGACGAGCATACGTACCGAAGCACTTGCTCAGATTGGTCTGTTTGTCAATGAAGACTTTGGCAGAGACAACGTTTCCGAAAGGCATGAACATCTGAAGGACATCCTGGTCTCCGAACTCCTGGGGCAGGTGATAGATGAACAGGTTAGCCCCCTCAGGACCTCCTTCTGGCTCCCGCCGGCTGCACCCTGCAGCAGGGACTGGCTGTAGAGGGAAGGCAGGGCGGACGCAGTGTACTGCTGCATCCCTGAGTAAGCCTGGGTCAGGGCATCCATGGAACTCGCTCCAGAGCCATTAGCCATCGAGGCCCCCAGGCCCCCGTTCATAGCAGCCATACCTAACACGCTGACCCCCCCAGTGAGGGCGTTGAGGTTGTTGAGGCCCATGGAGGCGCCCGTCAGACCGCCGCCAAGGCCCTGGGTCAGTCCCAGAGAGGCCAGGGTGTTCATGGCTGCACCCGCGCTGGAACCTGCCGTCTGG
>TU234691
GTGAAGCCAAACACAATACGGGCATGCATGAAACCACAAGATCTAAACAAAGCCATCAAGAGAGAACGTAATCCTTTACGTACCATTAAAGAGGTAGTTGCTGAAATCCCGAACGCCAAGGTATTTTCAGTTGTTGATGCGAACCAAGGACGTTCTGCATGTTCAATTCACCGTTTTGGAGGTATTCCTTCAAGATATTGTTGTTCGGAATCACGTCCGCTCCAGAGTTTTTTTTCCTAAAGGTGCTTCGCAGAGCATTTGAAAGGTCTGGAAGGTGTCTTAAACGTCATGGATGACATTATTGTCTGGGGTGATAACACAGAGCAACACGACCGGAGACAGACAGCTACTAGACAGACTGAGGAGCATCAATTTGAAACTGAATAAGGGCAAGTGCAAaatcagaatgacagaaatcagcTACACTGGACGTGTTATGAAAATGTCACGCCAGGtaCTCACTGAGGGCATACTCACCGCTGACCCCCCCAGTGAGGGCGTTGAGGTTGTTGAGGCCCATGGAGGCGCCCGTCAGACCGCCGCCAAGGCCCTGGGTCAGTCCCAGAGAGGCCAGGGTGTTCATGGCTGCACCCGCGCTGGAACCTGCCGTCTGG

Function

NR:

description
PREDICTED: transmembrane protein 26-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234689 False 514 lncRNA 0.56 2 94762662 94763813
TU234690 False 625 lncRNA 0.55 3 94762662 94764274
TU234691 True 614 TUCP 0.50 2 94762662 94776356

Neighbor

gene id symbol gene type direction distance location
LOC110500283 gdi2 coding downstream 75841 94665928 ~ 94686821 (-)
asb13b LOC106561665 coding downstream 150870 94604044 ~ 94611792 (-)
LOC110500221 LOC106561669 coding downstream 233054 94526548 ~ 94529608 (-)
LOC110500153 LOC106561673 coding downstream 345654 94412244 ~ 94417008 (-)
LOC110500132 LOC106561675 coding downstream 395468 94364015 ~ 94367194 (-)
LOC110500320 LOC106604557 coding upstream 13284 94777558 ~ 94781368 (-)
LOC110500345 LOC106561680 coding upstream 195644 94959918 ~ 94974913 (-)
trnay-gua NA coding upstream 245328 95009602 ~ 95009691 (-)
LOC110500368 LOC105021811 coding upstream 251401 95015675 ~ 95020429 (-)
LOC110502417 LOC106561684 coding upstream 333105 95097379 ~ 95124547 (-)
G207336 NA non-coding downstream 4152 94758211 ~ 94758510 (-)
G207337 NA non-coding downstream 6732 94753434 ~ 94755930 (-)
G207328 NA non-coding downstream 25934 94736522 ~ 94736728 (-)
G207323 NA non-coding downstream 32804 94729559 ~ 94729858 (-)
G207322 NA non-coding downstream 34154 94728303 ~ 94728508 (-)
G207358 NA non-coding upstream 48206 94812480 ~ 94812983 (-)
G207373 NA non-coding upstream 59162 94823436 ~ 94824226 (-)
G207392 NA non-coding upstream 90374 94854648 ~ 94855369 (-)
G207287 NA non-coding upstream 99256 94863530 ~ 94866355 (-)
G207421 NA non-coding upstream 155801 94920075 ~ 94921025 (-)
G207249 NA other downstream 132923 94629437 ~ 94629739 (-)
G207244 LOC100194703 other downstream 145430 94616915 ~ 94617232 (-)
G206750 NA other downstream 434479 94327910 ~ 94328183 (-)
G206744 LOC106561643 other downstream 448744 94313390 ~ 94313918 (-)
G206742 LOC106561643 other downstream 449888 94312424 ~ 94312774 (-)
G207858 LOC106561692 other upstream 613449 95377723 ~ 95408714 (-)
G207959 NA other upstream 759694 95523968 ~ 95524227 (-)
G207884 NA other upstream 839954 95604228 ~ 95609786 (-)
G207876 LOC106561706 other upstream 917763 95680851 ~ 95686864 (-)
G208077 NA other upstream 1065100 95829374 ~ 95832362 (-)

Expression


Co-expression Network