G210588 (LOC100194703)


Basic Information

Item Value
gene id G210588
gene name LOC100194703
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 98558573 ~ 98568696 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU238639
tgatattctgcaaaaggtacagggattggactgttgAGGACTGGGgtcaagtcattttctctgatgaatcccctttccgattgtttgtggCATCCgtaaagcttgtctggagaagacaaggtgagagctaccatcagtcctgagtcatgccaacagtaaagcatcctgagaccattcatgtgtggggttgcttctcagccaagggagtgggctcactcacaatttttgcctaagaacacagccatgaataaagaatggtaccaacacatcctccgagagcaacttctcccaaccacccaggaacagtttggtgacgaacaatgcctttcccagcatgatggagcaccttgccataaggcaaaaatgataactaagtggctcggggaacaattATTTTGTACATCTGAGCTTACCTTGATGACCTTCGACTTCGGTGCCCAGTCTTGCagaactcctcctcctcctcctcctccatagaCCTGACCCAACTGCTCACGCTCCTTAAATAGACTCTTCAGCTGATCATCCAAACAATGATGTAAATATCACATAATACACCAAAGAGAGGAGCTTCTATAagtctgttctgttctaacagtctactgtacctgttctaacagtctactgtacctgtctaacagtctactgtacctgttctgttctaacagtctactgtacctgttctaacattctactatacctgttctgttctaacagtctactgtacctgttctaacagtctactgtacctgtctaacagtctactgtacctgttctaacagtctactatacctgttctaacagtctactatacctgttctgttctaacagtctactgtacctgttctaacagtctactgtacctgttctaacagtctactatacctgttctaacagtctactatacctgttctaacggtctactgtacctgttctaacagtctactgtacctgttctaacagtctactgtacctgttctaacagtctactgtacctgttctgttctaacagtctactgtacctgttctaacagtctactgtacctgttctaacagtctactatacctgtctaacagtctactgtacctgttctaacagtctactgtacctgttctaacagtctactgtacctgttctaacagtctactgcacctgttctgttctaacagtctactgtacctgttctaacagtctactatacctgttctgttctaacagtctactgtacctgttctaacagtctactatacctgtctaacagtctactgtacctgttctaacagtctactgtacctgttctaacagtctactgtacctgttctaacagtctactgtacctgttctaacagtctactatacctgtctaacagtctactgtacctgttctaacagtctactatacctgtctaacagtctactgtacctgttctaacagtctactatacctgttctaacagtctactgtacctgttctaacagtctactatacctgtctaacagtctactgtacctgttctaacagtctactgtacctgttctaacagtctactgtacctgttctaacagtctactgtacctgttctgttctaacagtctactgtacctgttctaacagtctactgtacctgttctgctctaacagtctactgtacctgttctgttACCAGTCTTCTCTGTTTATCCTGGTTCACTATGTTATCCACACAAACCGTTTTCTCTTTCTTGCTGCCAGCAGCTGCTTTCTGTTCCGTAGCCTGTAGATAAGGAAAGGCATGACTCATATTGTCTGGATAAACTGACTCTTTCCTCAGTAGCTGTAATGAGACATGGTAGTGTTTAACCCTTGCCTGGTCACAGATATTTGGCAT
>TU238637
ATTAAGTtttcataaacactacataaatgCCGTCATACTACATCTTTGAAGGATTTCTTACCGCGTGGGTCTTGCTGTGGAGTTCCTCCCTAAGGCgagtcacctcctcctccacctccctctctgggtcgtcctcctcttcttgcTCCTCAGACACAGGCCCCAGTCCTGCAAACTGCTGCTGCTCCCTCatcagctccttctctctcttcctctggctgTGTAGTGTGTCAAGGCAGTTCTTGACCTTCGACTTCGGTGCCCAGTCTTGCagaactcctcctcctcctcctcctccatagaCCTGACCCAACTGCTCACGCTCCTTAAATAGACTCTTCAGCTGATCATCCAAACAATGATGTAAATATCACATAATACACCAAAGAGAGGAGCTTCTATAagtctgttctgttctaacagtctactgtacctgttctaacagtctactgtacctgtcctgttctaacagtctactgtacctgttctaacggtctactgtacctgttctgttctaacagtctactgtacctgttctaacagtctactgtacctgttctaacagtctactgtacctgttctgttctaacagtctactgtacctgttctaacagtctactatacctgttctaacagtctactatacctgttctaacagtctactgtacctgttatagtctaacagtctactgtacctgttctaacagtctactgtacctgttctgttctaacagtctactgtacctgttctgttctaacagtctactgtacctgttctaacagtctactgtacctgttctaacagtctactgtacctgttctaacagtctactgtacctgttctaacagtctactatacctgtctaacagtctactgtacctgttcgaacagtctactgtacctgttctaacagtctactatacctgtctaacagtctactgtacctgttctaacagtctactatacctgttctaacagtctactgtacctgttctaacagtctactgtacctgttctaacagtctactatacctgtctaacagtctactgtacctgttcgaacagtctactgtacctgttctaacagtctactatacctgtctaacagtctactgtacctgttctaacagtctactatacctgttctaacagtctactgtacctgttctaacagtctactatacctgtctaacagtctactgtacctgttctaacagtctactgtacctgttctaacagtctactgtacctgttctaacagtctactatacctgtctaacagtctactgtacctgttcgaacagtctactgtacctgttctaacagtctactatacctgtctaacagtctactgtacctgttctaacagtctactatacctgttctaacagtctactgtacctgttctaacagtctactatacctgtctaacagtctactgtacctgttctaacattctactatacctgttctgttctaacagtctactgtacctgttctaacagtctactgtacctgttctaacagtctactgtacctgttctaacagtctactatacctgttctgttctaacagtctactgtacctgttctaacagtctactatacctgtctaacag

Function

NR:

description
interaptin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU238639 False 1869 lncRNA 0.42 2 98558573 98565589
TU238637 True 1620 lncRNA 0.52 4 98561391 98568696

Neighbor

gene id symbol gene type direction distance location
edc3 LOC106561715 coding downstream 22883 98521998 ~ 98535690 (-)
LOC110500720 LOC106561717 coding downstream 44712 98474734 ~ 98513861 (-)
lmo2 rbtn2 coding downstream 131915 98424015 ~ 98426658 (-)
LOC110500713 LOC106561713 coding downstream 206088 98313023 ~ 98352485 (-)
LOC118936884 NA coding downstream 413562 98127948 ~ 98145517 (-)
LOC110500748 LOC106561725 coding upstream 19220 98587916 ~ 98601250 (-)
LOC110502529 LOC106584711 coding upstream 74294 98642990 ~ 98689136 (-)
LOC110500839 LOC105018309 coding upstream 124060 98692756 ~ 98723102 (-)
LOC110500636 NA coding upstream 227153 98795849 ~ 98808194 (-)
LOC110500630 NA coding upstream 234309 98803005 ~ 98808340 (-)
G210580 NA non-coding downstream 18918 98539393 ~ 98539655 (-)
G210577 NA non-coding downstream 21799 98536570 ~ 98536774 (-)
G210569 NA non-coding downstream 37790 98520438 ~ 98520783 (-)
G210556 NA non-coding downstream 86663 98471709 ~ 98471910 (-)
G210536 LOC106561714 non-coding downstream 106883 98437900 ~ 98451690 (-)
G210594 NA non-coding upstream 8411 98577107 ~ 98577323 (-)
G210595 NA non-coding upstream 8695 98577391 ~ 98577598 (-)
G210596 NA non-coding upstream 9183 98577879 ~ 98578163 (-)
G210598 NA non-coding upstream 13410 98582106 ~ 98582336 (-)
G210599 NA non-coding upstream 13991 98582687 ~ 98582903 (-)
G209841 NA other downstream 939361 97618859 ~ 97619212 (-)
G209802 NA other downstream 1056179 97501172 ~ 97502394 (-)
G209560 NA other downstream 1141385 97416821 ~ 97417188 (-)
G208658 NA other downstream 2136349 96421866 ~ 96422224 (-)
LOC118943885 LOC106561728 other upstream 349752 98914015 ~ 98946069 (-)
LOC118943882 LOC106561728 other upstream 373778 98936783 ~ 98944041 (-)
G210765 NA other upstream 457036 99025732 ~ 99026118 (-)
G211127 NA other upstream 554537 99123233 ~ 99123658 (-)
LOC118936886 NA other upstream 1046980 99615676 ~ 99619142 (-)

Expression


Co-expression Network