LOC110511860 (LOC106579366)


Basic Information

Item Value
gene id LOC110511860
gene name LOC106579366
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18033343 ~ 18048841 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970588.1
GCCTGTACTTTATCAGAGTTTGCAACTACGACGCTAAATGTCTGACCCTGGACGCGAATTCCGGTCCAGCCATAATATACAATGTGCGCATTCATTGGCACGTCACTATGTCAGACCTCTAAAGATGGCGACCGCCTACGAGAAATTCAACCTGCACACTACCCCAGAGAAGTTTTACATTGAGGCATGTGATGACGGCTCAAATGATGTATTGTCCATTGACAGGGTGTCCACAGAAATGATCCTCACCGTGAGGAAGGACATTCCTCCCCATGCGGTCACCAGGCCAATATGTGGGATCATGGGAACTATCCGTCTGGTGGCAGGCACGTACCTCATCGTTATCACAAAGAAGAAGAAGGTGGGTGACCTGTTGGGCCATGCCGTGTGGAAGGCTATGGACTTTGACGTTATCTCTTACAAGAAGACTGTGCTGCacctgacagacaaccagATGCAGGACAACAAAGCCTTCCTGTCCATGATCAACAGTGTTCTGCTCACAGACGGCTTCTACTTTGCTACAGACTACGACCTGACCCACACTCTGCAGAGGCTTGCCAACACCAGTCCTGAGTTCCAGGAGATGAGCCTGCTGGAAAGGGCAGATCAGCGGTTTGTGTGGAATGGTCACCTGTTGAGAGAATTCCTGCCACAGCCAGAGCTGCACAGGTTTGCTTTCCCAGTTGTCCACGGCTTCATCATTATGAAGTCCTGCTGCATCAATGGGAAGATCTTTGACTGGAACATCATCTCCAGGCGGAGCTGCTTCAGGGCTGGAGTACGTTACTACGTTAGAGGCATTGACTCAGAGGGTCATGCAGCTAACTTTGTGGAGACAGAGCAGATTGTCCAGTACAGCGGGGGCAAGGCCTCATTCGTACAGACCCGGGGCTCCATCCCCTTCTACTGGTCCCAAAGACCCAACCTCAAGTACAAACCAAAACCTCAGATCAGTAAAACCATCAACCATCTGGATGGCTTCCAAAGGCATTTTGACTCGCAGATCATCATTTATGGAAAGCAAGTGATTTTAAATCTGATTGACCAGAAAGGCTCAGAGAAACAATTGGAACAGGCCTTTGACAAAATGGTGTCCAGTTTGGGCAACGGCATGGTCAAATACATAGCGTTTGACTTCCACAAGGAATGCAGTCGGATGAGGTGGCATCGCCTGCAGATCTTAGTCGATATGGTGACAGAGATGCAGGATGAGTATGGGTACTTCCTGGTTGATGTGGATGGGAACGTTCTGGTGCAACAGGAAGGGATGTTCCGCAGTAACTGCATGGACTGTCTGGACCGTACCAACGTCATCCAGAGTCTGCTGGCACGACGCTCACTGCAGTCACAGCTGGAGCGACTGGGAGTTCTCCACATGGGCCAGAGGATTGAAGATCAGGCCGACTTCGAGAAGATCTACAAAAATGCGTGGGCAGACAATGCCAATGCGTGTGCCAAGCAGTATGCTGGCACAGGGGCCTTGAAGACAGACTTCACAAGAACAGGGAAGAGGACACAATGGGGGCTGGTGATGGACGGCTGGAACTCCATGATCAGATACTACAAGAACAACTTCTCAGACGGCTTCAGACAGGACTCTATTGATCTGTTCCTGGGTAACTATGCCATTGATGAGGCAGACATGACCACACCCCTTCACGAGACCAAAGACTGGAAGTTCCTCACGtTGCCCATTATCATGGTTGTGGCATTCTCCATGTGTATCATCTGCCTCCTCATGGCTGgtGACACGTGGACGGAGACCCTGGCGTATGTGCTGTTCTGGGGCACAGCTAGCTTCGTGACAGCCGGCGTCATCCTCTTCAACGGTCGGGAGTTTGTAGACTCGCCCAAGCTGGTCCAGAAGGAGAAGATGGACTGAATGTGTGCGTGTGGAAAGCAGCTACGCCCCACAGactgctcctcttcctcttcatcccACTCTTCTTCATCATCGTTCCCTCAGCATCAGCGGGCCTGGAGCCTGTACTGATTACTGATCCAACGgcatgaggaagaggaggaggaggatggggtgaGAGAAAGGCCAGGTGTATGATGTAGGGCTGTGAAGCATACAGGGACTCGCTCTGCACTGGTCTGCTGCTGTCCACACCACTAAGCACATTAtttgggctggggctggggaagaTCCCtaaccttgtccatagactgacTGTATACGCTGAAAACTGTCTGATTTTATGATACAATAACCCACTACGGTAACACAGTTACCCTTCTGCACGGAATGCATATGAACGGACACTGGCACTGCTGCTGTTTCCATAGCAACCTTGACACGGGAACTACTTTTTCAAAAATCTTgccctttttgttgttgtttttgttgattTGTCACCTTCTAGCTACATCATGTCATATTTTCTCTGTTGGTTGCCATATTGTTTGTGTCATTGCCCCTGAAGAGTCGATCTGAACGTGGTGTCTTAGTGTGATAGCCACTGGCACCCAATATGTCAGCTGTCTGACGGCCCAGCCCAAGCCATGATCCCAAAACTAGCTCACCAATAGTCATGGAGAGAATATGCTAGCTGGCCAATAGGCAGGAAGAGAACGTGCTAGATGGCCAGTGATTGGGGAGAGAATTTTCTAGCTGGCCAACAGTCAGCTAGAGAATGTTCTAGCTGGCCAATAGTTGGGGAGAGAATGGGCCGAACTGTTTCAATAGGGAACTTTAGTTATGGTGTCCCACCACCATTAATGCCATTGTAACTGGCCATAATATTCTCAATCACTGCACTTCTGAGTGCACAGACAGACCCTCAAAGGGTTTCACATGAGGATTCCTCGGAGATGTGACGAGAGGAAtgtttgtctgtctggctgtctagtCTTCCCAGGGATGGAAAGCTTCATGAAACAGCTGGAAAGACGAATCCTCATTAGTTTCTGACAACTAAAAGGTGTGAGAGAGCATCAAACTATATACTATAGTGAGTAGGATCTGTCTTTGACCAGTAGACTGCGAGGCCCAGACCTAGGCTAATAATGAAGCGTGGATTTAAAGGTccaaatgcagccatttttatatcaatatcaaatcatttctgggtaaccgCTAAGTAACTTACTgttattgttttcaattaaaatggtcgaAAATAAAATAATTGTCTGGGAATGGTTTTAGGGGAGGGGTAAActgaactagctgttattggcagagaggtttggaaatcTTTCTTATTCATTTATTAACTCATTTTTACCGTcgggtgatgtcaccaggcaggtcaaaactccatcccaccaaaaaaggctgaaatttcaggcggtcttttctaACACGAGAAGAGCATTATTATTTCACAGTGTTATTCCAACCTGGAAATATATATTAATCATGGGAAAATATAGTTTTTGACTGAACTGGGCATTTAAACGAACCAAAGTCTCATGGGGCATTGGGGATTTTAAATGGCACTTGTCCCCTATGAcaatttctttgttttagtgtgtcTCTGGATGGGATTGTGAActgttgctctctctcacacaatctTTCTCCTATATTATTTATCCTTTGATTATTGGCTGTTCTGTAGCACTAGCCCCAAGTCAAATTATGCTGCCTTACCGCAGTGTTTAGTAGCAGGATTGGAGCCAATTCCATATAaattcaattcaggaagtaaaatcCAATTCACAATTGTATtctcattgaaaagcattgagaACTGTTTAATTGGAAtaggaatttcagtttacttcctgaattgaaattaaattgagcccaaccctggtgTATAGTGTACATAATCATTACAGGATCACACTTACCTTACCTGCAGTCAGAGTGGCACCTGCTGATCTGAGAATGTTAAAGTATGTAATTTTAAATTGATTATATTGCCGCTTATGTGTCTTTCCACTTCAACTGTAGTGGTACAAAACGACAATGAGAGAGTACGTATGTCCTATAACTTTAAATGTAGTGGTCCAATAATACATCGGGGTATGGTTACTATGATGAAGCATAAGTTGGTTATTATGCTTCTCAAAGCTACATATTGAAATGGCTCATTTGCTGTAGCTATAACCCTCGGTATACATAGGATGCCATGCAAATGGACAACAGTACATTCCGCTGTGCATTATCAGCCATAAGCCTATCAAATACAAGAATCAGCCAGCATAGTGTCTCTTGCTGATCTGTGTTTTTAAACAGATGATTTAGGTGCCATGTTAACCTAGATACAATTTAATGTAATGACAAAGCATTGTATGCTTGTAAGAATGATGTGCTATTTAAGCTGAGTCATGTTTGAGCGGTTTTAGACAAATATTTTTGGTTTGACTGCTTTACCAATGAAAATGGGTTGCTACTGTTGGCTCAATGCAGTAATAAGAAAACAAGCTGGACCAGTTTTAATTGTTTTCTAGGCCTATATTATTGTCACTTGTTTTGTTTATCAGAGGATTTATTTTGGGGGTGTTATTTTCCAGGATTTTAATTTGttattgtgtttttttgtcaCTTAAAACATTGTGTCCAAGAATGTGTAATAAATGTGTCATCAATCA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016791 phosphatase activity molecular_function

KEGG:

id description
K21797 SAC1, SACM1L; phosphatidylinositol 4-phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970588.1 True 4551 mRNA 0.45 18 18033343 18048841

Neighbor

gene id symbol gene type direction distance location
LOC110505118 LOC106579600 coding downstream 55690 17975160 ~ 17985544 (-)
LOC110511884 cg024 coding downstream 63492 17968009 ~ 17969851 (-)
LOC110511898 LOC106579390 coding downstream 68465 17957248 ~ 17964878 (-)
LOC110511923 LOC106579390 coding downstream 85907 17940518 ~ 17947436 (-)
LOC110503762 LOC106605503 coding downstream 844996 17075513 ~ 17188347 (-)
LOC110511851 LOC106579350 coding upstream 905 18049746 ~ 18085029 (-)
LOC110503747 lars2 coding upstream 44863 18093704 ~ 18154474 (-)
LOC110511808 LOC106579331 coding upstream 131649 18180490 ~ 18182783 (-)
LOC110511774 LOC106579313 coding upstream 151217 18200058 ~ 18207022 (-)
zufsp cf113 coding upstream 161180 18210021 ~ 18219582 (-)
G230735 NA non-coding downstream 13557 18019141 ~ 18019786 (-)
G230734 NA non-coding downstream 14907 18014482 ~ 18018436 (-)
G230732 NA non-coding downstream 22608 18010521 ~ 18010735 (-)
G230731 NA non-coding downstream 24244 18008723 ~ 18009099 (-)
G230730 LOC106605517 non-coding downstream 26034 18007067 ~ 18007309 (-)
G230858 NA non-coding upstream 30452 18079293 ~ 18080512 (-)
G231065 NA non-coding upstream 109412 18158253 ~ 18158589 (-)
G231072 NA non-coding upstream 126866 18175707 ~ 18176072 (-)
G231073 NA non-coding upstream 128604 18177445 ~ 18177681 (-)
G229707 NA other downstream 984999 17043792 ~ 17048344 (-)
G229380 LOC106605502 other downstream 1183144 16849972 ~ 16850199 (-)
G229373 LOC100194703 other downstream 1193504 16839389 ~ 16839839 (-)
G228191 LOC106578455 other downstream 2242178 15762029 ~ 15791401 (-)
G231652 rn146 other upstream 550889 18599730 ~ 18601875 (-)
LOC110511176 LOC106579058 other upstream 1110459 19065512 ~ 19282368 (-)
rims2a LOC106579570 other upstream 1493261 19416054 ~ 19652601 (-)
G232980 NA other upstream 1599245 19648086 ~ 19648629 (-)

Expression


Co-expression Network