XLOC_021619 (kctd6b)


Basic Information

Item Value
gene id XLOC_021619
gene name kctd6b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 19670085 ~ 19673769 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042909
AGTGTGGGTCATGTGACCGTGAGTGCGGCGGCTGCTCGCTCGAGCCTCGTCTTTGAGCTGCTGCTAACACTCGTCAGTGTCCCGTACAGCAGCTCATCATAACCCAAGATCAAACCCTTCATAACCAGAGGACAGGTCTTGTCGAACATAAAAACCGTTTTTCTTCTGTGGGTCAGACTGGACAACCTACCCTTATGAAATGGATAATGGGGACTGGGGACATAGGTTGACTCACCCAGTCACCTTAAATGTTGGAGGACACCTCTACACCACCTCCATTTCCACTCTTCAGCGTTACCCAGACTCCATGCTGGGTGCCATGTTTCGTGGTGACTTCCCCACTACACGGGACGCTCAGGGAAACTATTTCATTGATCGGGATGGGACGCTTTTCCGCTATATATTGAACTTCCTGCGCACATCCGAGCTCACTCTTCCTGTAGACTTCACTGAGCTGGACCTTCTGCGAAAAGAAGCAGACTTCTATCAGATCGAGCCTTTAATCCAATGCCTCAATGACCCGAAACCTCTGTACCCGCTGGACACCTTCGAGCAGGTGGTGGAGTTGTCCAGCACACGCAAGCTGTCCAAGTACTCAAATCCCGTAGCGGTCATCATCACACAGCTAACCATAACCACCAAAGTCCACTCGCTGCTTGAAGGAATATCCAACAACTTCACCAAATGGAACAAGCACATGATGGACACCAGAGACTGTCAGGTGTCCTTCACCTTTGGACCGTGTGACTATCACCAAGAGGTGTCTCTGCGGGTGCACCTCATGGACTACATCACCAAACAGGGCTTCACCATCAGGAACACACGGGTGCACCACATGAGCGAACGGGCCAATGAGAACACTGTGGAGCATCACTGGACTTTCTGCAGGCTGGCGTATAAAGTAGAAGATTGACCAGTTCATGAATGTGCTTTCACGTGTGCTTGCTGCTGTGTCCGAGGCCATGTTTAAATCTGTAGAAATTCCAGTGTTGGTTAATTCAGACCAATTGAAAAGGAAAAAAGGGAATTAAGTGTAAAGTTCACATCATGCCATGTGGAATACTTTATAATTCATAATTCGCAAAAAATCGAAAGGATCAAAGTGGGATAAGGAAAAAAAGCATATTCAGATTATGCAATTTCACAAATCTGTGAACCCCTTGACCCCTTGTGTAAAAAAAGATAGTTTCaccagaaattcattcattccatcAGATCAGACTTCTGTCAAACATTGTGCACACACTATGTGCAACATCAAGATGTTAGTGTGCATGTATTTCTAACACGTTCTGTAAGTATTAAATGTCCACATGCTGTAAATCAAAA

Function

symbol description
kctd6b Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within protein homooligomerization. Orthologous to human KCTD6 (potassium channel tetramerization domain containing 6).

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process
GO:0016567 protein ubiquitination biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-14 Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within protein homooligomerization. Orthologous to human KCTD6 (potassium channel tetramerization domain containing 6).

Ensembl:

ensembl_id ENSDARG00000023703

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042909 True 1329 mRNA 0.46 3 19670085 19673769

Neighbor

gene id symbol gene type direction distance location
XLOC_021618 abhd6b coding upstream 2327 19655301 ~ 19667758 (+)
XLOC_021617 flnb coding upstream 17170 19606291 ~ 19652915 (+)
XLOC_021616 slmapb coding upstream 65672 19590006 ~ 19604413 (+)
XLOC_021615 atp6ap1lb coding upstream 86271 19558574 ~ 19583814 (+)
XLOC_021614 NA coding upstream 193934 19473396 ~ 19476151 (+)
XLOC_021620 smim4 coding downstream 2011 19675780 ~ 19677933 (+)
XLOC_021621 si:dkey-93l1.6 coding downstream 17377 19691146 ~ 19695976 (+)
XLOC_021622 dnase1l1 coding downstream 27818 19701587 ~ 19711988 (+)
XLOC_021623 flna coding downstream 85359 19759128 ~ 19809027 (+)
XLOC_021624 emd coding downstream 139908 19813677 ~ 19822223 (+)
XLOC_021613 CR388168.1 non-coding upstream 451145 19217528 ~ 19218940 (+)
XLOC_021608 CR388168.2 non-coding upstream 487697 19177891 ~ 19182388 (+)
XLOC_021607 NA non-coding upstream 550642 19105546 ~ 19119443 (+)
XLOC_021606 CR788311.1 non-coding upstream 603098 19051485 ~ 19066987 (+)
XLOC_021627 AL953864.1 non-coding downstream 513856 20187625 ~ 20187739 (+)
XLOC_021628 NA non-coding downstream 671541 20345310 ~ 20361426 (+)
XLOC_021632 CR352228.2 non-coding downstream 797986 20471755 ~ 20471870 (+)
XLOC_021651 NA non-coding downstream 1799333 21473102 ~ 21474482 (+)
XLOC_021656 CR847529.1 non-coding downstream 1949966 21623735 ~ 21623849 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017033 kctd6b,kctd6,LOC107570288,LOC108436290,LOC107671957 coding CM030122.1 CM030122.1 42289746 ~ 42290831 (+)