LOC110513818 (gbp)


Basic Information

Item Value
gene id LOC110513818
gene name gbp
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22089856 ~ 22091328 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021593527.2
TTGCTTACTTGCATTTCTGCCAAGCAACGTGGTGAGAGGAAGGAACTGAGCTACGCTCCCATTCATTTCGAAACTACAGCCAAGAAACACACAAAATACAACAAAATGCCTTGTCGAAAGGAGAACTATATCCTCTTGGAGCAGTCTGTTACCGTCGATTCAAAAGAAGTGGACGCTTTGGTCACGAAAATCGGTGAGGCGCTGCAGCTTCACAACAATAGTGCTAATCAAAAGACGATGTCATGTCTCCACGGTCTCACCAGCAACTGCAACAGTAGCAACATCAAACAagctaacaacaacaacaatggtgTGGCCCTGCAAAAACGTACCGGGTGCTGTATACGGCTTCGAAACCGGAGGCAACGTAGTAACAGAGCTAGTCCGTACAGCTTCCCTGGCTCAAGTAACCAGGAGTGGGACCATTTCAAACGTTGGGACCGAAAGGGGATCAACGCAGCTGTCGAGGATGACCCACATCAGTTACTTCAGGAATTAATTTTGTCTGGGAATCTAATCAAAGAAGCGGTCAGGCGGCTGCAGTTCTCTACGACGGAGTGTGGAGATCTTTCGGACAAGCTGCAGTGCTGATGATGCGGACAATATATTCATTAATGATATGTTACCGACAACGTAAACTATTTTGctgacatagctagctagctataacgTTAGTCTACATGTTGAACGATTAAATGTCATGTTGGTAACGTCGTTAGCATGTCTACTTTGTGACCGTTAATTTAGGTTTTTAATTTAGCCAatgcgttagctagctagttaacgttaaccATGTTTGTTTGCAACTCCAACTTGATGGTTAGTTAGATTTTTGTTTATGGGTGGGGACTCTCCTTTTCACACTTCGTTGGCTTTTAGTTAGTAGCTAGTTATGTAAACCAAGTGAATGCTATGTCAACCAAGTGAAAGCTTTACGTTGACATTGTTTACAAATCTAATCTCAGGCCGCCAGCATTGCCTGTTTTGGTCCGTTAGTTTGAATCGGGTCGTTTCAAATCAAAGGTCTTACGTTACTAGTTAGCAAGCTAGGCTAGCGCCACACTCATGTCAGGGTGGATTCCTAACCCCCAGCAAGGCAGCACTGTGACTGCTCCGATAGCAGCTTTGTATTTCCTGTACGCAGAAGGAACGGGATCGACAACCAGCTACCAAACCGTGTAGGAGACGGGCGACATTTCAAATGGTTCTGACTAAATGTCTCTTCGACTGGCTGGGGGcggtgtattttttattttttttaaattttttctTCATAATGGGATGCGGATGTTTCATTTTCCCATTGTCTGTGTCAAGTGATTTACCATGACCACTTCGCAACGAAGTATTTTATAATGTTCCTGAGTATTCAGGCCTTTGTCTTAAATAAACAGTGTttttattttgtgtgtatgtgtatgctttTCGCCATCAGATAAAGGTTCCAATAAAATATAGCAAGTAACTACAGTA

Function

symbol description
gbp Predicted to enable kinase activity. Predicted to act upstream of or within phosphorylation. Predicted to be active in cytoplasm. Is expressed in gill. Orthologous to several human genes including FRAT1 (FRAT regulator of WNT signaling pathway 1).

NR:

description
GSK-3-binding protein-like

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016301 kinase activity molecular_function

KEGG:

id description
K03096 FRAT2; frequently rearranged in advanced T-cell lymphomas 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021593527.2 True 1473 mRNA 0.43 1 22089856 22091328

Neighbor

gene id symbol gene type direction distance location
LOC110513791 LOC106580504 coding downstream 38382 22043389 ~ 22051474 (-)
LOC118944504 LOC106605473 coding downstream 48972 22039478 ~ 22040884 (-)
LOC110503903 LOC106605471 coding downstream 140010 21937182 ~ 21949846 (-)
LOC110513756 LOC106580458 coding downstream 163542 21902473 ~ 21926314 (-)
pmvk pmvk coding downstream 202584 21884781 ~ 21891946 (-)
LOC110513832 ccne2 coding upstream 203539 22294867 ~ 22302014 (-)
LOC110513844 LOC106581355 coding upstream 214611 22305939 ~ 22317533 (-)
LOC110513910 LOC106605373 coding upstream 233394 22324722 ~ 22336054 (-)
LOC110513923 LOC106605373 coding upstream 245134 22336462 ~ 22341729 (-)
trnas-aga-55 NA coding upstream 352762 22444090 ~ 22444171 (-)
G235283 NA non-coding downstream 72542 22016919 ~ 22017314 (-)
G235279 NA non-coding downstream 76292 22013257 ~ 22013564 (-)
G235278 NA non-coding downstream 76686 22012937 ~ 22013170 (-)
G235276 NA non-coding downstream 79843 22009718 ~ 22010013 (-)
G235274 NA non-coding downstream 82752 22006905 ~ 22007104 (-)
G235312 NA non-coding upstream 986 22092314 ~ 22095038 (-)
G235750 LOC106580611 non-coding upstream 149696 22241024 ~ 22241932 (-)
G235785 LOC106580611 non-coding upstream 192552 22283880 ~ 22284776 (-)
G235793 NA non-coding upstream 227598 22318926 ~ 22319165 (-)
G235794 NA non-coding upstream 228027 22319355 ~ 22319576 (-)
LOC118946878 NA other downstream 334355 21744425 ~ 21755710 (-)
G235092 LOC100194668 other downstream 346445 21738845 ~ 21743411 (-)
G234621 NA other downstream 591024 21498408 ~ 21498832 (-)
G234600 NA other downstream 619911 21469661 ~ 21469945 (-)
LOC110513321 LOC106580205 other downstream 634140 21438546 ~ 21455972 (-)
G235881 NA other upstream 482505 22573833 ~ 22574989 (-)
G237047 NA other upstream 1065781 23157109 ~ 23189031 (-)
LOC110514600 ensa other upstream 1680196 23771511 ~ 23780158 (-)
G237657 LOC106605316 other upstream 2089228 24180556 ~ 24183964 (-)
G237832 NA other upstream 2429891 24521219 ~ 24521544 (-)

Expression


Co-expression Network