LOC110520122 (LOC106586243)


Basic Information

Item Value
gene id LOC110520122
gene name LOC106586243
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49905433 ~ 49920328 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597197.2
AGTGCGATCCATCTAATCTGTCGTGACTACTCCTCTTTCCCCTCACTCTGGTAATGCTGGCAGCATCCATCCACAGTACACACTGTGCTGTCTCTGTTCCAGAGAGAATATATCAGTTCTGCACAGGGAGGAGAGGATTAACACAACATCAGCTCATCTGCGTACACATTCAGGGAACAAATGAGCACCCAAGGCTTCTTCTCTTTTCTATCCAACTCCAACCATCACAGGACTTGAGACTCTCATCGTTGGAGCATTGTTCATCCAATTCTTTCTGTGGTGAGAGGATTTAAAGGAGGACACATTCTTTTGCGTATTGGATTTTGCGATTTGTGTGTGCTGTTTTTGTTTACTTAGTTGAGAATTGTTCAATTGGAACAATGCAATTAATATTACATAGTTTAAACTAGCTCTAAGCATCCAGTTCTTTCCAGGGGGCCTCTAACTTTTTGGACGGCGCTAGAAGGTTTGCTGCTTGTTCATCTGATTTGTCCAACCTGAGTGTCAGAATGCCATCCAGGGAGTCTTACGAGGTCCAGAAGGGAGAGAAGTCCCTGGTGCAGAAGGCCAAGCAGGAGGCCAACCAGCAGGACATACTGGCAGCTGCTCTGGGgatgaggatctcaggaccccaGAAACCTCCAGCCACAATCTGGCAGCCTCTCAAACTGTTTGCCTATTCACAGCTCACCTCGCTGGTCCGCAAAGCCACGCTGAAGGACAGCAGCCTGCCGCACAAGTACGAAAAAGTCCACAACTTCAAGGTCCACACGTTCCGGGGACCTCACTGGTGTGAATACTGTGCCAACTTCATGTGGGGGCTGAAGGCTCAGGGAGTCAAGTGTGCAGATTGTGGTTTGAACGTCCACAAGCAGTGCTCCACTATGGTACCCCGCAACTGCGTGCCAGACCTGAAACACGTCAAGAAAGTGTACAGCTGTGAGCTAACAACTCTGGTGAAAGCTCACAACACCAAGCGACCCATGGTAGTGGACATGTGCATACAGGAAATTGAATCAAGAGGTCTGAAGTCTGAAGGGCTCTACAGAATGTCTGGATTCAGCGATTCAGTCGAAGATGTCAAGTCGGCATTTGACAGAGATGGTGAGAAGACAGACATCTCTGCAAACGCTTATGAAGATATCAACATCATCACGGGAGCACTTAAACTGTACCTCAGGGATTTACCCATTCCTGTCATCTCATACGATGCCTACCCCAGGTTCATTGAGGTTGCAAAGCTGGAAGACCCAGAGAAGCAGCAAGAGGCCTTCCGTGAGGCTCTGGAACTTCTGCCTGCAGCACACAGTGAAACCCTGAGGTACCTCATGGTCCATTTAAAGAGGGTAACGTTGAATGAGAAGGACAACCTGATGAATGCCGAGAACCTGGGCATTGTTTTCGGGCCCACCCTCCTGCGTGCCCCAAACCTGGATGCCATGACAGCACTCAACGACATCCGTTACCAACGGCAGGTGGTGGAGTTCCTCATAAAAaatgaagacatcctcttctgaaaACATACATCCATTCTGCTGAGATATGGAAGGAAAGAGACACTTTTTTTTGTAAAATGGCTTGATGCTGCCTAATCACTTTTTTTGTGCAAGGACTTGAATAGTAAGGAATCTTTGTATTACATTTGTTATATATCCATTTCCACTTCTAGTGGATTAGCGCTGAACCACACTTTTTCTTCCCCTGTAACGGGTGTGGATGATGATGTACCTTAAACTTGCATGTCTGTCTCCCCATTTTTGTCGGGGCTTGTGTAGAACACTGATGGACCAGACTTGGCCACGTCTTTATTTTGTATAGCTTTGTAGAAGTAACCCAGCATGTGGTAAAGATTGTGAAACATTGTTACTCTGCTATTATTTGTCCTGTAGATGTACAGTACCTCCCGCCCGGTTGCCTATTAGGCAATTGTTTTTGTGAAACATTGTATACCTGGATGTGAAATAGACTACTGTATCTTCTCTGAACCTTTGTAATGATCTTTGACTGATCCTGTCTTTTTTGCCTTTTCAGCTGTTTTATATGCAAGTCTTCTTTGGGGGAAATTCAAAGCCTCTTTCAATCAGAAAACAAGTAATCATTGTACTTTTAAAACTTTATTGCATTCAAACTACTACATTTGTGCAgttaatgtttttttattgtaataTTTGTTTACTTAATTTGCTCATGTACATTTTAATTTATTAAACCTTGCTTTCTGAAAATGCA
>XM_036974450.1
CAGTGCGATCCATCTAATCTGTCGTGACTACTCCTCTTTCCCCTCACTCTGGTAATGCTGGCAGCATCCATCCACAGTACACACTGTGCTGTCTCTGTTCCAGAGAGAATATATCAGTTCTGCACAGGGAGGAGAGGATTAACACAACATCAGCTCATCTGCGTACACATTCAGGGAACAAATGAGCACCCAAGGCTTCTTCTCTTTTCTATCCAACTCCAACCATCACAGGACTTGAGACTCTCATCGTTGGAGCATTGTTCATCCAATTCTTTCTGTGGGGGCCTCTAACTTTTTGGACGGCGCTAGAAGGTTTGCTGCTTGTTCATCTGATTTGTCCAACCTGAGTGTCAGAATGCCATCCAGGGAGTCTTACGAGGTCCAGAAGGGAGAGAAGTCCCTGGTGCAGAAGGCCAAGCAGGAGGCCAACCAGCAGGACATACTGGCAGCTGCTCTGGGgatgaggatctcaggaccccaGAAACCTCCAGCCACAATCTGGCAGCCTCTCAAACTGTTTGCCTATTCACAGCTCACCTCGCTGGTCCGCAAAGCCACGCTGAAGGACAGCAGCCTGCCGCACAAGTACGAAAAAGTCCACAACTTCAAGGTCCACACGTTCCGGGGACCTCACTGGTGTGAATACTGTGCCAACTTCATGTGGGGGCTGAAGGCTCAGGGAGTCAAGTGTGCAGATTGTGGTTTGAACGTCCACAAGCAGTGCTCCACTATGGTACCCCGCAACTGCGTGCCAGACCTGAAACACGTCAAGAAAGTGTACAGCTGTGAGCTAACAACTCTGGTGAAAGCTCACAACACCAAGCGACCCATGGTAGTGGACATGTGCATACAGGAAATTGAATCAAGAGGTCTGAAGTCTGAAGGGCTCTACAGAATGTCTGGATTCAGCGATTCAGTCGAAGATGTCAAGTCGGCATTTGACAGAGATGGTGAGAAGACAGACATCTCTGCAAACGCTTATGAAGATATCAACATCATCACGGGAGCACTTAAACTGTACCTCAGGGATTTACCCATTCCTGTCATCTCATACGATGCCTACCCCAGGTTCATTGAGGTTGCAAAGCTGGAAGACCCAGAGAAGCAGCAAGAGGCCTTCCGTGAGGCTCTGGAACTTCTGCCTGCAGCACACAGTGAAACCCTGAGGTACCTCATGGTCCATTTAAAGAGGGTAACGTTGAATGAGAAGGACAACCTGATGAATGCCGAGAACCTGGGCATTGTTTTCGGGCCCACCCTCCTGCGTGCCCCAAACCTGGATGCCATGACAGCACTCAACGACATCCGTTACCAACGGCAGGTGGTGGAGTTCCTCATAAAAaatgaagacatcctcttctgaaaACATACATCCATTCTGCTGAGATATGGAAGGAAAGAGACACTTTTTTTTGTAAAATGGCTTGATGCTGCCTAATCACTTTTTTTGTGCAAGGACTTGAATAGTAAGGAATCTTTGTATTACATTTGTTATATATCCATTTCCACTTCTAGTGGATTAGCGCTGAACCACACTTTTTCTTCCCCTGTAACGGGTGTGGATGATGATGTACCTTAAACTTGCATGTCTGTCTCCCCATTTTTGTCGGGGCTTGTGTAGAACACTGATGGACCAGACTTGGCCACGTCTTTATTTTGTATAGCTTTGTAGAAGTAACCCAGCATGTGGTAAAGATTGTGAAACATTGTTACTCTGCTATTATTTGTCCTGTAGATGTACAGTACCTCCCGCCCGGTTGCCTATTAGGCAATTGTTTTTGTGAAACATTGTATACCTGGATGTGAAATAGACTACTGTATCTTCTCTGAACCTTTGTAATGATCTTTGACTGATCCTGTCTTTTTTGCCTTTTCAGCTGTTTTATATGCAAGTCTTCTTTGGGGGAAATTCAAAGCCTCTTTCAATCAGAAAACAAGTAATCATTGTACTTTTAAAACTTTATTGCATTCAAACTACTACATTTGTGCAgttaatgtttttttattgtaataTTTGTTTACTTAATTTGCTCATGTACATTTTAATTTATTAAACCTTGCTTTCTGAAAATGCA

Function

NR:

description
N-chimaerin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597197.2 False 2229 mRNA 0.45 7 49905433 49920327
XM_036974450.1 True 2075 mRNA 0.45 8 49905433 49920328

Neighbor

gene id symbol gene type direction distance location
LOC110520121 LOC106581751 coding downstream 3858 49895327 ~ 49901575 (-)
LOC110520120 LOC106586242 coding downstream 10323 49879110 ~ 49895110 (-)
LOC110520119 NA coding downstream 33752 49867187 ~ 49871681 (-)
LOC110520118 LOC106586238 coding downstream 43357 49814771 ~ 49862076 (-)
sp3a LOC106586237 coding downstream 103406 49794657 ~ 49802027 (-)
atf2 atf2 coding upstream 42139 49962467 ~ 49978892 (-)
LOC110520125 atp5g3 coding upstream 58868 49979196 ~ 49981870 (-)
lnpa LOC100194569 coding upstream 163772 50084100 ~ 50099697 (-)
evx2 evx2a coding upstream 199341 50119669 ~ 50124620 (-)
nfe2l2a LOC106586247 coding upstream 404781 50325109 ~ 50332906 (-)
G268502 NA non-coding downstream 98763 49806408 ~ 49806670 (-)
G268501 NA non-coding downstream 100254 49804977 ~ 49805179 (-)
G268467 NA non-coding downstream 110816 49791748 ~ 49794617 (-)
G268462 NA non-coding downstream 166983 49738222 ~ 49738450 (-)
G268470 NA non-coding upstream 2669 49922997 ~ 49930662 (-)
G268548 NA non-coding upstream 20548 49940876 ~ 49945765 (-)
G268560 NA non-coding upstream 40587 49960915 ~ 49961213 (-)
G268673 NA non-coding upstream 125598 50045926 ~ 50046290 (-)
G268700 NA non-coding upstream 157456 50077784 ~ 50077987 (-)
LOC110520112 LOC106586230 other downstream 337959 49563841 ~ 49608114 (-)
LOC118944672 NA other downstream 402462 49494001 ~ 49503025 (-)
G268310 NA other downstream 409630 49495477 ~ 49495803 (-)
LOC110520139 LOC106586251 other upstream 519877 50440201 ~ 50442930 (-)
LOC110520160 LOC106586095 other upstream 1208112 51126600 ~ 51130404 (-)
fgf9 NA other upstream 1552996 51471899 ~ 51478510 (-)
il1rl1 il1rl1 other upstream 1677071 51596933 ~ 51619476 (-)
LOC110520182 NA other upstream 2787855 52693956 ~ 52708816 (-)

Expression


Co-expression Network