LOC110520207 (LOC106586304)


Basic Information

Item Value
gene id LOC110520207
gene name LOC106586304
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 54181672 ~ 54191829 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597360.2
aagtatattcttGTGAAGGCTTAAATGATTTTACATGTAGACTACATTTTTATTTCAGTCATGACATGATGAAGAAGGAAACAATTTTTAGCCAACAAGTGTCCACCCCTATGAGGCCGTTCTATTTTTAGTATCAGCTGTTGCAATATAAAGATTTGCTACATAGCGGATTGCATCGCGGTTATGTGAGGCGCATTCCGGTCACGAAGGTAAAATGATGGCAATGATTTGAGGtaacggacagagagagggatgaggaatattTGTGCGTGAAGTGGTTGCTGGAGCGTTATTTCACGGCAACGGATATCAAATAATATTGgtATAGCCAGCTGCCTGTTGCCATGGCAACCAGCAGCGCGGTGCCTAGCGACAACCTCCTCACGTACaagctggtggtggtgggggatggTGGAGTGGGGAAGAGCGCGCTCACCATCCAGTTTTTTCAGAAGATCTTTGTGTCTGACTATGACCCCACCATCGAGGACTCctacctgaaacacacagagatagaTGGACAGTGGGCCATCCTGGACGTGCTGGATACAGCAGGCCAAGAGGAGTTCAGTGCTATGAGGGAACAGTACATGAGGACGGGGGATGGCTTCCTCATCGTGTTCTCTGTGACAGACAAGGCCAGCTTTGAACATGTGGACCGCTTCCACCAGCTCATCCTCAGGGTCAAAGACAGGGAGGCCTTCCCCATGGTGCTGGTGGCCAATAAGGTGGACTTGGTTCACCTCCGCAAAATCACCAGCGACCAGGGGCAGGAAATGGCTGCCAAACACAATaTCACGTACATTGAGACAAGTGCCAAGGATCCCCCTATGAATGTGGACAAGGCGTTTCATGAACTAGTCAGGGTTATAAGGCAGCAGATCCCAGAGAGGAgcctgaagaagaagaagaagatgaagtgGCGAGGAGAACGATCTACGGGTTCTCACAAAGTCCACTGTGTCATCTTGTGATGGTGTCGCCGCTGCTAGCAATGATATTAGAGAGAACTGCGGACTGGCAGTAACCAACAACTGGAGGGGGAATTGGGGGAGATAAGGAACTGACTGTTGACTGTTACGGTGTCAAAGAAAATCCCTCACTCCAAGGCATGGCCAAGTGGGGTCTTACAGGGGCATCATTGTCTGCCCGCTTCCCCTGATTGGTCAGAAAAAAGCACTCCCGGAAGAGCTCCTTATGAACTGACTGATTTCCAGACAGTGCAGTGATGATGCTCTCCATGGAAGTAGAGGTGGACATCAAGGTATTCTCCTGGGTGGGGAGATGTGACGTTAGATGTTGTTAGGGACCTATGATCTGAGTGTTTGTGTTGTGGTTGTAAGTTctccatggtgttgaatgttaAATTCTGAAATGATAAAGAGGATGATTATGAAGTATATTCTATCTGCACTAGCCACAGGCATAAGAGGATTTGGCTTTGGGGTCCTGAAGAGAAGTGGGAGGATGTGGCTGTTAGTACTTTTTATTAAATTTTTTCTGGTGGGGAATCTGGCTTGAGGGGATCAGTTACTCCAAGCAACAATATGTTAGAGTTCTCTGTCTGATAGGGAGTATTTAATACCTAATGAAATGGCTTGTACTGTTAAAGCACTAAACAAAAAAAACTTTGGGGCTTGTTCATCTGGGGTGTATTCATAACGCCAATTCTGTTGCAAACTCCAAACGGAAAACCTTTGCACGAAAACTAGactttctattggacaaattcaggtaggtccctccctgttTTGTTCAGTTTGCTTGTTTTGGTTCTTAAATGGTAAATGATttccattgaaaaatgtaatgaatacacccctggttaGAAATTTGCCCTTGAATGAAGGAAGTACCTTTGCACTTTGAATAGATTTTGACTTTCATATCTGCATGTGTGGAAAAATTGCAATGATGAAAGGGAAGACATTATAGAAATTGACTCAATGTGGAAAAACTGAGCTTAACATAATTATGTCAATACCATGTAGCTCATTTGCTTGTCTCATGTCGGTTGGACAGAACAGtttataccagtggaggctgctgaggggaggacggctcataataatggctggaacgatgcatatggaatggcatcaaacacactGAAACCATGTATTTAATACTatgccgttccagccattacaacatgcctgttctccccaattaagttgcCACCAACCTCTTGTGTTTTATGCTCTCAgccctgggttgtgttcagtagggcacactgtAGAAAAACAGTTTGCAATGGAAAACTAAAATTGACATTTCTTATTGAAGTCCAAGTAATCAATCCACGTTTCAGTACATTTTCATCTGGTACCTACTGAACATAATCCTGGAGTGATCCTGCTGTACTTCACCCAGAGGTACAGTGAAAGTTCTACTTCCCAGGGTATGAAGCAACAGACATGGTGTCTTTGGCAgtattttacaaaaaaaaagagGTCTGAAGAAATCAATGATATTGTATCAAGTATGTTTGATACTTTTTTATTATTGATCTGAATTTCTtgtgttttttaaaataattaaTAATTTATTACTGTACCTGTTACCTCAACATGATGTATTATAACTGGCTGTGTCTGACTGAGCTAGAGGAAGATGAGGCACAAAACAATGGCCACTGCCTTTCTTTCTAGCTTCCTTCAGGGTTTCAATAATGAATAAAGAAATACAGTATTGTGAATTCAATGATACtatctctgactgtgtgtctgtatgtgttctTGGCTTACTTAACCTCGGAACCAAAAAAACTTTTACAAGAGATTGTGGTTGCACCCCAAATTTGCCCTGGACGAACGTAATGCACTGTATAGgggattgggtgccatttgggactttaTTCACACTGTCTTTACATGTATGTTCTGTGTAGTGATGACCATAACTAATATCAGCCGTCAAACCATTGACTGTTAGGCGCTAAGTGTCCTGCTGTTGAAGTAGACTGTTTTATAATGATCTGTAAAATATGTATTATGATGTGCCTaaagcaggtagcccagtggttagtgttgggccagtaaccgaaaggtcgactccccgagctgacaaggtaaaaatgtgtgtttctgcccctgagcaaggcagttaacccacctttcCCTGGGcgctgaagacatggatgtcgataATGGcagcacctctgattcagaggggttgggttaaatgcggaagacacatttcagttgaaggcattcagttgtacaactaactaGCTATCCCCCTTTCCATAATAACAGCCTTCAGAGGTGCTTGTTCAGCAGGAGCCCCTGATATTAATCATGTTGCTGGGTCAGTAGAATGCTGTATTTCAAAATATTGATCTCTCCACCCACCATGGAATAGATACAGCCTCTAGAGCTAAAACGGATCCGATTAGAAAATTAATGTCCTTGTCATCAGACTCCAATGAAAAGATTGAGTGTCACTTTCTTTTAAACTCTCACTGCAAAGATATCCTTGACTTTCTGGGTGATAGTGTGTTCTATGTTCATTTGATATGCAAAGGAATTAAAATGTTATTGTACA
>TU311250
CGCGGTTATGTGAGGCGCATTCCGGTCACGAAGGTAAAATGATGGCAATGATTTGAGGtaacggacagagagagggatgaggaatattTGTGCGTGAAGTGGTTGCTGGAGCGTTATTTCACGGCAACGGATATCAAATAATATTGaTCACGTACATTGAGACAAGTGCCAAGGATCCCCCTATGAATGTGGACAAGGCGTTTCATGAACTAGTCAGGGTTATAAGCAGATCCCAGAGAGGAgcctgaagaagaagaagaagatgaagtgGCGAGGAGAACGATCTACGGGTTCTCACAAAGTCCACTGTGTCATCTTGTGATGGTGTCGCCGCTGCTAGCAATGATATTAGAGAGAACTGCGGACTGGCAGTAACCAACAACTGGAGGGGGAATTGGGGGAGATAAGGAACTGACTGTTGACTGTTACGGTGTCAAAGAAAATCCCTCACTCCAAGGCATGGCCAAGTGGGGTCTTACAGGGGCATCATTGTCTGCCCGCTTCCCCTGATTGGTCAGAAAAAAGCACTCCCGGAAGAGCTCCTTATGAACTGACTGATTTCCAGACAGTGCAGTGATGATGCTCTCCATGGAAGTAGAGGTGGACATCAAGGTATTCTCCTGGGTGGGGAGATGTGACGTTAGATGTTGTTAGGGACCTATGATCTGAGTGTTTGTGTTGTGGTTGTAAGTTctccatggtgttgaatgttaAATTCTGAAATGATAAAGAGGATGATTATGAAGTATATTCTATCTGCACTAGCCACAGGCATAAGAGGATTTGGCTTTGGGGTCCTGAAGAGAAGTGGGAGGATGTGGCTGTTAGTACTTTTTATTAAATTTTTTCTGGTGGGGAATCTGGCTTGAGGGGATCAGTTACTCCAAGCAACAATATGTTAGAGTTCTCTGTCTGATAGGGAGTATTTAATACCTAATGAAATGGCTTGTACTGTTAAAGCACTAAACAAAAAAAACTTTGGGGCTTGTTCATCTGGGGTGTATTCATAACGCCAATTCTGTTGCAAACTCCAAACGGAAAACCTTTGCACGAAAACTAGactttctattggacaaattcaggtaggtccctccctgttTTGTTCAGTTTGCTTGTTTTGGTTCTTAAATGGTAAATGATttccattgaaaaatgtaatgaatacacccctggttaGAAATTTGCCCTTGAATGAAGGAAGTACCTTTGCACTTTGAATAGATTTTGACTTTCATATCTGCATGTGTGGAAAAATTGCAATGATGAAAGGGAAGACATTATAGAAATTGACTCAATGTGGAAAAACTGAGCTTAACATAATTATGTCAATACCATGTAGCTCATTTGCTTGTCTCATGTCGGTTGGACAGAACAGtttataccagtggaggctgctgaggggaggacggctcataataatggctggaacgatgcatatggaatggcatcaaacacactGAAACCATGTATTTAATACTatgccgttccagccattacaacatgcctgttctccccaattaagttgcCACCAACCTCTTGTGTTTTATGCTCTCAgccctgggttgtgttcagtagggcacactgtAGAAAAACAGTTTGCAATGGAAAACTAAAATTGACATTTCTTATTGAAGTCCAAGTAATCAATCCACGTTTCAGTACATTTTCATCTGGTACCTACTGAACATAATCCTGGAGTGATCCTGCTGTACTTCACCCAGAGGTACAGTGAAAGTTCTACTTCCCAGGGTATGAAGCAACAGACATGGTGTCTTTGGCAgtattttacaaaaaaaaagagGTCTGAAGAAATCAATGATATTGTATCAAGTATGTTTGATACTTTTTTATTATTGATCTGAATTTCTtgtgttttttaaaataattaaTAATTTATTACTGTACCTGTTACCTCAACATGATGTATTATAACTGGCTGTGTCTGACTGAGCTAGAGGAAGATGAGGCACAAAACAATGGCCACTGCCTTTCTTTCTAGCTTCCTTCAGGGT

Function

NR:

description
PREDICTED: ras-related protein M-Ras-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597360.2 False 3546 mRNA 0.43 6 54181672 54191829
TU311250 True 2012 lncRNA 0.42 3 54182554 54191653

Neighbor

gene id symbol gene type direction distance location
LOC110520203 LOC106586308 coding downstream 287884 53883698 ~ 53893788 (-)
rab3gap1 LOC106586310 coding downstream 316687 53817111 ~ 53864985 (-)
LOC110520198 LOC106586311 coding downstream 434803 53671765 ~ 53746869 (-)
ubxd2 ubxd2 coding downstream 517694 53661100 ~ 53663978 (-)
LOC110520195 LOC106586316 coding downstream 619234 53537677 ~ 53562438 (-)
LOC110520212 NA coding upstream 233729 54425558 ~ 54429214 (-)
LOC110520213 ube2f coding upstream 312235 54504064 ~ 54594080 (-)
LOC110520216 LOC106586300 coding upstream 425699 54617528 ~ 54624544 (-)
LOC110520218 NA coding upstream 441909 54633738 ~ 54636478 (-)
LOC110520214 LOC106586297 coding upstream 447401 54639230 ~ 54646342 (-)
G273798 NA non-coding downstream 8416 54172998 ~ 54173256 (-)
G273794 NA non-coding downstream 12286 54169182 ~ 54169386 (-)
G273790 NA non-coding downstream 15698 54165442 ~ 54165974 (-)
G273770 LOC106586291 non-coding downstream 34840 54146010 ~ 54146832 (-)
G273752 NA non-coding downstream 69417 54112052 ~ 54112255 (-)
G274198 NA non-coding upstream 89753 54281582 ~ 54289271 (-)
G274208 NA non-coding upstream 123500 54315329 ~ 54317786 (-)
G274412 NA non-coding upstream 415338 54607167 ~ 54607372 (-)
G274339 LOC106586295 non-coding upstream 477533 54669362 ~ 54678112 (-)
G274531 NA non-coding upstream 616990 54808819 ~ 54809081 (-)
G272713 LOC106586324 other downstream 930588 53249926 ~ 53251084 (-)
LOC110520182 NA other downstream 1472856 52693956 ~ 52708816 (-)
il1rl1 il1rl1 other downstream 2581442 51596933 ~ 51619476 (-)
fgf9 NA other downstream 2707533 51471899 ~ 51478510 (-)
LOC110520160 LOC106586095 other downstream 3052362 51126600 ~ 51130404 (-)
G274344 LOC106586294 other upstream 488089 54679918 ~ 54682805 (-)
LOC110520227 plekhm3 other upstream 911665 55068639 ~ 55122013 (-)
G275250 NA other upstream 1218314 55410143 ~ 55411487 (-)
si:dkey-91i10.3 LOC106586420 other upstream 3078953 57270782 ~ 57297762 (-)
G277673 LOC106586423 other upstream 3211155 57402984 ~ 57403575 (-)

Expression


Co-expression Network