LOC110520269 (LOC106586397)


Basic Information

Item Value
gene id LOC110520269
gene name LOC106586397
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 56832398 ~ 56844653 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974743.1
TCCAAGGTGCTATCCAAGGTGTCAGTCCGGAGTGCGTATAGAGCAGTAAAGATGTCCATGGTCCTGTTTGCCTTGGTGATGAGGAGTACGGATGGTCTACCCCTGTCTGCCACCACAGACTATGAGCAGGACGAAGGCCTACAGGAAACCAAGAAGCAGATCAAAACTCTGTCTGAGAAACTCTCCACGTTCCCAAGCCGCTGCTCTCTGAAGACAGGAAAGTTCAATATCCATTTCACCAGTTCTCTGGGAATAGGATATCTGGTGGTGTGTACGGAGAACTGTCCCAACGCCATGGCCTTCTGTTTCCTGGAAGAGCTGCAGAACGAGGTTCTCCAAAGGTGCGACGGCTTTCTCATCCGCAACGCTGTGAGGCCTTACTCCTTCAGAGAGTTTGACGACTTCCTCCAGGATACGAAGCAGCGCTACAATAACTCCTGCTCTCTGACCTCTAAGATCAACCTGGCTGACATGCAGTCAGAGCTCAAGATGATACCGACATACCAGCTGTCCTCTGAGGACCTACGGTTCGGCTTCTCACGCCGCAAGGTCTTCCAGTACAAGAGCATAAcTCCCAGCCAGCAGTTTGAGCCGGTGTCTCTACCTGGCATCATCTCCTGTGTGCTAAGCATCTTCTGTGGAGGCCTCAATCTACTCCAAGGGTTTCATGCCGTAGAGGGCTTTATGCAGAGTTACAACGACGAAGACTTTAATGACATGATTTCCTTTTTCCTGGGCACAGCAGCTGGTTTGTATCAGTTTTACCTGTTTGCTTACTTCTCTGTGAGGAGGAACAGTAAGTCATTCCTGGCCTTCGCCCTGATCTGTCTGTCCAACATCTGCCTGTTTGAACTGAGGAACGTGTGGCAGATCCTCTTCCACGTGACTGTAGCGGCCTTCATGACACTACAGATCAGACTGAGGCAGCTGCAGAGCAAATCTCCGGACTACAACGTCTGACAAACCACAACCACGAGACTTACAACCAAACAACAAGAGTGGGGTGGGGGAGATACTAAAACAAACCAACTTTGTCTGAAAGATACTTACCGCCAACAGCAAAACTAGAAACCACTACAATGTCTAAGGAAAAGAGGTATCTCTGCCTTTATCTTCCTTCCATTGCTTCTCCACCACAGCTCAGGTTTGATGGATGCTGAGCTCACTCGAGTGACCTCCAAAGTGATGCAGACCAATAGGATTAATGGGTGGTGCCGCTACAGCTAAATTATTAGTTAATTGGCTAATAACAATCATGAATGTCTTTGGTGGAATTAACAGGATTCTGAACAGGGGTTTCTGTCTTAGACTATTAGGACATGTTAGTAAATTGGACTACTGGAGACCAGGGTTTCTTAATGTGGTCCTCTTTTTGCCATGTGTACTGCATGTCCAGTGAGGGTTAGGCCAGTACTCAACTGTCATTCTCTGAATCCCTGACATCCCATACGTGTCTCACATGTTTAGACCATTTTTGTAGttcaattttttgttgttgacatggCTAGTAAATATTTGTATTGATTATGAATTTACTTTTGAATAAATGATGTGCATGATTA
>XM_021597452.2
TGTGTAAGCATCAGGTCaaatcagtaaaaaaaaataacagaaaaGTTGTTCGATTTTTTTTTAGTTAGTTCGTTTTTTTTTGTTCTGTTTCCATCCCGCATAGTAGGTGGCGGGTGCACATACAATTGTGTGATTGCCAATACACCATAGAAGAAGAATGGATGTAGCTATAAAAATGAAACGTGCCCAGTGATGGTACGGTAGCAGCAACTTCGCAGCGGTGCATTGACGCGTGTCTTTTCAGGTGTCAGTCCGGAGTGCGTATAGAGCAGTAAAGATGTCCATGGTCCTGTTTGCCTTGGTGATGAGGAGTACGGATGGTCTACCCCTGTCTGCCACCACAGACTATGAGCAGGACGAAGGCCTACAGGAAACCAAGAAGCAGATCAAAACTCTGTCTGAGAAACTCTCCACGTTCCCAAGCCGCTGCTCTCTGAAGACAGGAAAGTTCAATATCCATTTCACCAGTTCTCTGGGAATAGGATATCTGGTGGTGTGTACGGAGAACTGTCCCAACGCCATGGCCTTCTGTTTCCTGGAAGAGCTGCAGAACGAGGTTCTCCAAAGGTGCGACGGCTTTCTCATCCGCAACGCTGTGAGGCCTTACTCCTTCAGAGAGTTTGACGACTTCCTCCAGGATACGAAGCAGCGCTACAATAACTCCTGCTCTCTGACCTCTAAGATCAACCTGGCTGACATGCAGTCAGAGCTCAAGATGATACCGACATACCAGCTGTCCTCTGAGGACCTACGGTTCGGCTTCTCACGCCGCAAGGTCTTCCAGTACAAGAGCATAAcTCCCAGCCAGCAGTTTGAGCCGGTGTCTCTACCTGGCATCATCTCCTGTGTGCTAAGCATCTTCTGTGGAGGCCTCAATCTACTCCAAGGGTTTCATGCCGTAGAGGGCTTTATGCAGAGTTACAACGACGAAGACTTTAATGACATGATTTCCTTTTTCCTGGGCACAGCAGCTGGTTTGTATCAGTTTTACCTGTTTGCTTACTTCTCTGTGAGGAGGAACAGTAAGTCATTCCTGGCCTTCGCCCTGATCTGTCTGTCCAACATCTGCCTGTTTGAACTGAGGAACGTGTGGCAGATCCTCTTCCACGTGACTGTAGCGGCCTTCATGACACTACAGATCAGACTGAGGCAGCTGCAGAGCAAATCTCCGGACTACAACGTCTGACAAACCACAACCACGAGACTTACAACCAAACAACAAGAGTGGGGTGGGGGAGATACTAAAACAAACCAACTTTGTCTGAAAGATACTTACCGCCAACAGCAAAACTAGAAACCACTACAATGTCTAAGGAAAAGAGGTATCTCTGCCTTTATCTTCCTTCCATTGCTTCTCCACCACAGCTCAGGTTTGATGGATGCTGAGCTCACTCGAGTGACCTCCAAAGTGATGCAGACCAATAGGATTAATGGGTGGTGCCGCTACAGCTAAATTATTAGTTAATTGGCTAATAACAATCATGAATGTCTTTGGTGGAATTAACAGGATTCTGAACAGGGGTTTCTGTCTTAGACTATTAGGACATGTTAGTAAATTGGACTACTGGAGACCAGGGTTTCTTAATGTGGTCCTCTTTTTGCCATGTGTACTGCATGTCCAGTGAGGGTTAGGCCAGTACTCAACTGTCATTCTCTGAATCCCTGACATCCCATACGTGTCTCACATGTTTAGACCATTTTTGTAGttcaattttttgttgttgacatggCTAGTAAATATTTGTATTGATTATGAATTTACTTTTGAATAAATGATGTGCATGATTA

Function

NR:

description
vesicle-trafficking protein SEC22a-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974743.1 False 1562 mRNA 0.47 7 56832398 56843811
XM_021597452.2 True 1788 mRNA 0.46 7 56832398 56844653

Neighbor

gene id symbol gene type direction distance location
LOC110520265 LOC106586394 coding downstream 164807 56652369 ~ 56667591 (-)
LOC110520263 LOC106586393 coding downstream 181445 56600804 ~ 56650953 (-)
arl5a arl5a coding downstream 231825 56589557 ~ 56600573 (-)
LOC110520260 NA coding downstream 253748 56495151 ~ 56578650 (-)
LOC110520254 LOC106586385 coding downstream 783253 56047811 ~ 56049145 (-)
LOC110520270 LOC106586417 coding upstream 22556 56867209 ~ 56917413 (-)
slc49a4 dirc2 coding upstream 298782 57143435 ~ 57206958 (-)
LOC110520276 LOC106586419 coding upstream 387980 57232633 ~ 57260239 (-)
si:dkey-91i10.3 LOC106586420 coding upstream 427820 57270782 ~ 57297762 (-)
LOC110520278 LOC106586422 coding upstream 476585 57321238 ~ 57330396 (-)
G276969 NA non-coding downstream 12506 56818645 ~ 56819892 (-)
G276907 NA non-coding downstream 159806 56671494 ~ 56672592 (-)
G276844 LOC106586392 non-coding downstream 346726 56484375 ~ 56485672 (-)
G276843 LOC106586392 non-coding downstream 348683 56483429 ~ 56483715 (-)
G276840 NA non-coding downstream 351916 56480259 ~ 56480482 (-)
G277110 NA non-coding upstream 123383 56968036 ~ 57046855 (-)
G277168 NA non-coding upstream 209332 57053985 ~ 57054282 (-)
G277245 NA non-coding upstream 344011 57188664 ~ 57189944 (-)
G277259 NA non-coding upstream 364280 57208933 ~ 57209198 (-)
G275250 NA other downstream 1420911 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 1713186 55068639 ~ 55122013 (-)
G274344 LOC106586294 other downstream 2149593 54679918 ~ 54682805 (-)
G272713 LOC106586324 other downstream 3581314 53249926 ~ 53251084 (-)
LOC110520182 NA other downstream 4123582 52693956 ~ 52708816 (-)
G277673 LOC106586423 other upstream 558331 57402984 ~ 57403575 (-)
G277749 LOC106586429 other upstream 739733 57584386 ~ 57589183 (-)
G284018 NA other upstream 5869922 62714575 ~ 62715177 (-)
G286522 NA other upstream 8124896 64969549 ~ 64970755 (-)

Expression


Co-expression Network