LOC110520278 (LOC106586422)


Basic Information

Item Value
gene id LOC110520278
gene name LOC106586422
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 57321238 ~ 57330396 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597465.2
TATCTCTTGAAGTCCATAATTCGCTCATAGATGGTATCGAATGGAGGTGGAAAGTTTAATGTTTGTTAACATATGGTTGAAACCTTTACTAGAATATGAATGGAATAACATACTCAAACTTTGATAATCTCGAACATGTTTTGAAATTAGGCGAAACATTTGAGAAACACCCAAAAGGCGCTTACCACACGGTGAGATATGACTTTAAACCAGCCTCCATTGACACCGCCTGTGTGGGGGAGCTGGAGGTGGGAAAGGGAGAACTAGTTACTATCACACTGCCCAATCTGGAGGGATCCACTGCCCCTGTAACAGTCTTCAAAGGATCCAAGAGGCCTTATATGAAGGAATGTATTCTCATCGTAAACCACGATACTGGAGAGTACCGTCTGGAGAAACTCAACAGCAACATTGCTGTCAAGAAGACCAGGGCTGAAGGCAGCAGTAAGATCCAGTCTCGTATAGAGCAGCAGACCAGTCGTCTGAGCCAGCAGATGAagactagtggtaatggtagcagCAGCAAGACCCCAGCAGGCTCCAAGAGCTCTCCTCCCAAAGAGAATATGTCCCCTGCCTCCCCCATGGATGACATTGAGAGAGAGCTAATGGCAGAGGCGCGGGTCATGGACCAGATGAGTAGTGGGGACTCGTCCTCAGACTCCCACAGCTCCTCATCCTCCAGTAGTGGGGACAGTTCCAGCGGTAGTGACGCTGAGGACGAGTCCCGgcacccccctccccctagaCCCCCTGGGGGTCCCCCCACAGGGCCACCACCCCACCAGGGCATGCCTGTCCTCAccactgtcaccaccaccacctccccaccaTCACCAACTCGCAGTGGAGGACACCTATTGAGCACACTAAAGAATGACCTGCAATTAAGTGAGTCGGGCAGTGAAAGTGACGATGACTGACCAGTGAGTGACCACTATAATGCTGTGGGTGTGTTCAAGAGGTCAGTCTGTGGACAGCTGCACTGACCTCCAGATGGATGGGCGTCCTTTACAGTTACAACAGAAGTGGAATAAGAAGATGGAATATGGATGTGATCTTCTTAATGCCAAACAAGACTGCACCCCTACACCTCCGGAAGCAACACCGCTCAGCACCCCACCAGCATTTCAGTTTTAATGTGTCTTAATTCTATCAATAGTCTGACTTGTCTGTCTGTTAGTGCCTTTTTGACAGACATGGGCCAATAGTTGTGATCAATTCTCTTATCTACACATTTGAACTGGATTATTTTCACTGTACAGTTTAGTATTTACTAGTTGGCCAAAGTGAACTGGGAACCATACTCCTGATTCGAACAGACAAGGTACTGCTGTTATCAAGGATAGCGTCAgtgttttattagttgtagtacTTAGCCTTTCTGCTGTGAAATAATTACTCTtaaaatatagggaataggttgaagCAGTCATATCATTTAGTTTATTAGGAATTATCTTCAAGTTACTTTTTTTGTTTAATATATTTGGCCAAGCAACATATCAAGGTGGGGGGTATTTGAGGAAACTATTGCACTACTTGAAATGGATTGATTTAGCCTAGTGTGGGGTACACGCAACTTAGATTTTGCTCAGTGTTGCTACTTAATGTATTTGAAAGATTACTTGGCTTTGTAGCTTTAAACCTTCAATACTTGAATCTGACTTATGATTATTTATATTTAACATATTTACTCAAAGACCAACAGCTTATTATATTCTATGGGCGTCAGAGCAATGGAGGTGTAGGTAAACTCGTAGTGCCTGTAATTAGAACTGCTTTTCCGTTCACTACGATCTCTTCTGTTGCTATTGTTACAGGGGTGAGTCTCCAAAAGTGCTTTGCTGATTTGATTCATCGACTCGTTCTAAAGAATGCATTGGAGAAGAAGGCTTGAGGGTATTAAGCTTGGATCTTATCCATTTGAATATTAAGAAAGAGGTGATTCGTCAAGGAATTCATGAGACACGTGAGGAATCCAGGAAAGACTTCTGAGAAAGAGCCCAGGTCATATCTCGTATCTTGCTACTGCACCATCTCTGTAAATAGGAAATTTGTGTTTTATGTTAGAACATATGGTGCGTCgcaatctctcctttctcccgaagtgtgcacttgttcacttcccttcatggattcGAAAGGAAATCACTGGCAAATGGAATCTCTACCTTgcccatgcctccaccaatccaatgacTTTATATTTGTGGGGAGTTGTGaatgagtgcacacttcaggagaaaggagagattattgggaTGTAACAACCATGACCTCTCATAACAAACTCGGGCAACTGGGAAAGAAGGGCAGAGAGTGAGGAAACAGCCTCTGACTGGATAAATAATGAgaaattgtaataataataataatagtaatatgttgGAAGAATTTTGGATTCAGTAGGTGGTCATGAATAGGTAGCTATTTTGACTTTTTTCATTTTCGATAAATAAAACGTTATTGTTTGTC

Function

NR:

description
ELL-associated factor 2-like

GO: NA

KEGG:

id description
K15186 EAF; ELL-associated factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597465.2 True 2478 mRNA 0.43 6 57321238 57330396

Neighbor

gene id symbol gene type direction distance location
si:dkey-91i10.3 LOC106586420 coding downstream 29711 57270782 ~ 57297762 (-)
LOC110520276 LOC106586419 coding downstream 60999 57232633 ~ 57260239 (-)
slc49a4 dirc2 coding downstream 114280 57143435 ~ 57206958 (-)
LOC110520270 LOC106586417 coding downstream 403825 56867209 ~ 56917413 (-)
LOC110520269 LOC106586397 coding downstream 476585 56832398 ~ 56844653 (-)
LOC118963713 NA coding upstream 2222 57332568 ~ 57336298 (-)
LOC110505369 LOC106586424 coding upstream 79585 57409981 ~ 57414314 (-)
LOC110520281 LOC106586425 coding upstream 85686 57416082 ~ 57427344 (-)
LOC118964377 NA coding upstream 151200 57481596 ~ 57481720 (-)
LOC110520284 LOC106586429 coding upstream 268150 57595333 ~ 57609026 (-)
G277604 NA non-coding downstream 54042 57266936 ~ 57267196 (-)
G277576 NA non-coding downstream 98621 57220587 ~ 57222617 (-)
G277259 NA non-coding downstream 112040 57208933 ~ 57209198 (-)
G277245 NA non-coding downstream 131294 57188664 ~ 57189944 (-)
G277168 NA non-coding downstream 266956 57053985 ~ 57054282 (-)
G277647 NA non-coding upstream 19176 57349572 ~ 57349815 (-)
G277648 NA non-coding upstream 19999 57350395 ~ 57350781 (-)
G277649 NA non-coding upstream 20985 57351381 ~ 57351609 (-)
G277653 NA non-coding upstream 28752 57359148 ~ 57359527 (-)
G275250 NA other downstream 1909751 55410143 ~ 55411487 (-)
LOC110520227 plekhm3 other downstream 2202026 55068639 ~ 55122013 (-)
G274344 LOC106586294 other downstream 2638433 54679918 ~ 54682805 (-)
G272713 LOC106586324 other downstream 4070154 53249926 ~ 53251084 (-)
G277673 LOC106586423 other upstream 72588 57402984 ~ 57403575 (-)
G277749 LOC106586429 other upstream 253990 57584386 ~ 57589183 (-)
G284018 NA other upstream 5384179 62714575 ~ 62715177 (-)
G286522 NA other upstream 7639153 64969549 ~ 64970755 (-)
G286580 marco other upstream 7683863 65014259 ~ 65029736 (-)

Expression


Co-expression Network